Gene
| Gene Model ID | pfu_aug2.0_228.1_27070 |
|---|---|
| Locus | scaffold228.1 : 207411 ... 216934 : - |
| To GenomeBrowser | scaffold228.1:207411..216934 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_1912.1_00884 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27070.t1 | 5 | 1 | zf-H2C2_2 | 157 | 170 | 1.0e-07 | 31.8 | 0.069 | 170.0 | 2.7 |
| pfu_aug2.0_228.1_27070.t1 | 3 | 1 | zf-H2C2_5 | 160 | 182 | 1.6e-10 | 40.5 | 8.0e-07 | 0.002 | 18.2 |
| pfu_aug2.0_228.1_27070.t1 | 5 | 2 | zf-H2C2_2 | 175 | 197 | 1.0e-07 | 31.8 | 1.2e-05 | 0.029 | 14.6 |
| pfu_aug2.0_228.1_27070.t1 | 3 | 2 | zf-H2C2_5 | 189 | 210 | 1.6e-10 | 40.5 | 4.9e-07 | 0.0012 | 18.9 |
| pfu_aug2.0_228.1_27070.t1 | 5 | 3 | zf-H2C2_2 | 202 | 227 | 1.0e-07 | 31.8 | 1.1e-06 | 0.0028 | 17.8 |
| pfu_aug2.0_228.1_27070.t1 | 3 | 3 | zf-H2C2_5 | 219 | 243 | 1.6e-10 | 40.5 | 5.4e-05 | 0.13 | 12.5 |
| pfu_aug2.0_228.1_27070.t1 | 5 | 4 | zf-H2C2_2 | 563 | 570 | 1.0e-07 | 31.8 | 0.68 | 1700.0 | -0.4 |
| pfu_aug2.0_228.1_27070.t1 | 5 | 5 | zf-H2C2_2 | 577 | 599 | 1.0e-07 | 31.8 | 0.0014 | 3.4 | 8.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27070.t1 | gi|524917234|ref|XP_005113378.1| | PREDICTED: uncharacterized protein LOC101847175 [Aplysia californica] | 4.0e-31 |
| pfu_aug2.0_228.1_27070.t1 | gi|676445822|ref|XP_009050878.1| | hypothetical protein LOTGIDRAFT_90174, partial [Lottia gigantea] | 1.0e-25 |
| pfu_aug2.0_228.1_27070.t1 | gi|556775490|ref|XP_005982862.1| | PREDICTED: DNA-binding protein Ikaros isoform X7 [Pantholops hodgsonii] | 4.0e-16 |
| pfu_aug2.0_228.1_27070.t1 | gi|556775478|ref|XP_005982856.1| | PREDICTED: DNA-binding protein Ikaros isoform X1 [Pantholops hodgsonii] | 8.0e-16 |
| pfu_aug2.0_228.1_27070.t1 | gi|556775484|ref|XP_005982859.1| | PREDICTED: DNA-binding protein Ikaros isoform X4 [Pantholops hodgsonii] | 1.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27070.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27070.t1 atggcagatgatacaaacatcccaggcaagtctcaaactctgatggaccaagacgagcctggcccggatagtgcaatggc ccagttattactggccagctcgatggcccaacgggatatggccatcgaggaatccttgagggtacagaactctgcaaacg ttccaaccagtaaccgcatcaacgactcgccacaaccgtcctcctggcattcgggtgatggtcattcaccatcgcctagc aaccatttaccagggtcaccgggtccttcttttggtggcgtaagatgcacaaatagtttgtcacccaagcaggagccagt acgagatgctatgaatgatttcttgagaaatcaaggacaatatgattcttatgcagataatattgaccccggtgacgatg cagcgacatattccctaccggactcctccccagaggatctgtccgtagactcgatgctggattctccgaccaaagtctat aggtgtcgcctctgtagctttaacactagtacttacacacaacttcaattgcatatgccaaaacatggaggggtgaaagc attaaaatgtccaatgtgtgactattccaccaatgacaaaagtaattttcgtagacatcgacggctgcacatgggaaaca atccagtgagcgtcttcaaatgtggaaagtgctcgttttcaacaatcatgctacgaaaattcaaagaacattgtagtcag gttcacaatgaagatctgttgcatgtgccaaactctcacgtaagtcacatgacctttgcaccgcccacttacactgatgg agtggatcggacattgacgttaaacccacctttagatctgcaacatccaagccatcatcaaagttcgcttcatgggaatt tttcagcatctaatgcacttcattctctgttgacggggatacacccccctgccccgctatataggcgtcagacttaccct gcccagagtatcggtcaatatggtacatacttgccccctatgggacaagtgaacgaggaaaatcacatggcctcaaatta cttacgctcaattgtatcgtctattatgaatacccacccaccccctcgtataccccccagtagtactattacatcatcaa actattacttatcgtctgctcagcgtgaaccacatttatcatcaagtacacatacggctatgatgagtgacttacaaagc agagtgaaagtgaaagtagaaccacctgagcgtgacagcacaccagatgtttcaagttctgcattacctgtccaccccca tgttcttaataaaccgagtgctactttgaatgttcatccatattcaagacgattttccgatcctagccacagcattaata ctgctgaaaataacgaagcatcacaatcattagaaatggtacgaccaaattctactgagtcggaacaatcttacagacaa gaaccacgatcaagtgtcgataacacggtcaatacaacggttaagtcagaactcgtaagtgtaggtattcagtgctcggt gcagagaatgaagatggagacggatataaatagaaaccacagtatttttggctcaaatgttgatcagggtgtccagtgtg aattaatcactgcaaccggtagaaggacgcaaagatcgttatcggtaacgagcgagtccggaagcagtgaacagcaaggc aatcgatgcatacactgcggtgtaactttcgacgatgaagtattatactcgattcacataggctgccatagccacaccga tcctttcgtgtgtaacgtttgcggaaaacaatgtggaaataaatacggattttattcacatatcatgagagggcaccact attga |
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Protein
| Protein ID | pfu_aug2.0_228.1_27070.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27070.t1 MADDTNIPGKSQTLMDQDEPGPDSAMAQLLLASSMAQRDMAIEESLRVQNSANVPTSNRINDSPQPSSWHSGDGHSPSPS NHLPGSPGPSFGGVRCTNSLSPKQEPVRDAMNDFLRNQGQYDSYADNIDPGDDAATYSLPDSSPEDLSVDSMLDSPTKVY RCRLCSFNTSTYTQLQLHMPKHGGVKALKCPMCDYSTNDKSNFRRHRRLHMGNNPVSVFKCGKCSFSTIMLRKFKEHCSQ VHNEDLLHVPNSHVSHMTFAPPTYTDGVDRTLTLNPPLDLQHPSHHQSSLHGNFSASNALHSLLTGIHPPAPLYRRQTYP AQSIGQYGTYLPPMGQVNEENHMASNYLRSIVSSIMNTHPPPRIPPSSTITSSNYYLSSAQREPHLSSSTHTAMMSDLQS RVKVKVEPPERDSTPDVSSSALPVHPHVLNKPSATLNVHPYSRRFSDPSHSINTAENNEASQSLEMVRPNSTESEQSYRQ EPRSSVDNTVNTTVKSELVSVGIQCSVQRMKMETDINRNHSIFGSNVDQGVQCELITATGRRTQRSLSVTSESGSSEQQG NRCIHCGVTFDDEVLYSIHIGCHSHTDPFVCNVCGKQCGNKYGFYSHIMRGHHY |
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