Gene
| Gene Model ID | pfu_aug2.0_228.1_27072 |
|---|---|
| Locus | scaffold228.1 : 245533 ... 258624 : - |
| To GenomeBrowser | scaffold228.1:245533..258624 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_90632.1_27976 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27072.t1 | 1 | 1 | Lactamase_B_2 | 763 | 876 | 1.8e-08 | 34.1 | 5.5e-12 | 4.1e-08 | 33.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27072.t1 | gi|676446265|ref|XP_009051023.1| | hypothetical protein LOTGIDRAFT_213948 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_228.1_27072.t1 | gi|260828015|ref|XP_002608959.1| | hypothetical protein BRAFLDRAFT_287105 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_228.1_27072.t1 | gi|512878833|ref|XP_004919436.1| | PREDICTED: DNA cross-link repair 1A protein [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_228.1_27072.t1 | gi|542144158|ref|XP_005481144.1| | PREDICTED: DNA cross-link repair 1A protein [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_228.1_27072.t1 | gi|543246827|ref|XP_005416424.1| | PREDICTED: DNA cross-link repair 1A protein [Geospiza fortis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27072.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27072.t1 atggaggacgaggacgatatttgggattacaaaagctctgttggtaaacgtaaaagtaaaaaacttggttcaggacaaac aaacaatgcaagtcaacttgatgcagataaaagtaaacctggacagcaaaggaaaaaggcaaagaagacaaaaagagaga caacgtttaagaaaatggaaaaagaaccagtcattacaattgaagatgccagcacaccagaaaaacaaacgcagaccaaa agccagagaattgcaagtgcgtcaaagtccagcgggaaaaaatctgcaataaaatcatctcaaactcctgtgcgaaagat acatgagggattctgtccagtttgccaaatgccatttcggattttgccgttatcaccatcatggcacgttcgagagtgta tggaaagtccaaatgcagaggaagagtgtccagatggcgcaagctgtgataacaccatggagtcccattacaaagagtac gcccatcaaaccctcgctatgatacggtccacagcagagttcagtcctacagatgaaaatggcacatgtaaaaatggaac aaaaatgtcagcaaaggtgagactggagttttctgagataccggtacggagtgatcatatagctgtttcagtcgaggtca aatgtttgccgaaacaaaatatatctacgacgatggaaaaacgtgacaacgacgatgataatgacattatttcatctcca caagatttagatgactttatttcatctcctcaagatatatcggaaattatcgactctatggaaccagatgacaataagat tgttcaaaatatagacaagaatgatgatgatgatgatgaaaatgaagatctgagtgctattttgttagaggagttgattc cgactgaagatgatgaaagtaaaaatggcagcgctagaaaacgtaaaagcttgagaggattagatgaagacgtttccccc aaaaagcaggccttaatttcagagtatgcgtcaagtgagaataatgtttcttctcagaactcgagtggcctttcaaaagc aggcagagttagtacagttaagggtggagaagacagttgtacatctggcaggaagaaaaagatggcagggtccaaacgca aaagttctcaaagtgatattgacaacttttgctcacagaaatctgatacaagggacgaattcggtagcccgattgatttt atagatttatctcaaggagatgatggtgatgatatgaccaaagtttgcaagccaattgagaagaaaattacgagatcaaa acggaaaagtgtcaaaaaattagaagagggtgtatctcctctaaagcaagcctttctttcaaatgtagggaaaaattcag gtagtcaaaactgttcacaggtattggatgatactggaagcaaagggaagcaatccaaggaaggtagtagtcagaaagta gatgctgatgaaatcgacttgacaccgaaagacaactccagtcagtctactcaaactcaaaaaaataaaaagaggttgtc attgtcaaggaaaaaatccaagacgggtaagaacgatcagaatcagacttctctaacgtcattctttaagtgttcgtcta tgccgttagaaacaattgcagcaaaagtcaagaaagaagagtgttttgtaatatcagacagcgattcagacgctaatatc aaaaatgtgaaagataaagagcagacagcgccattggagggcaatctctctaaaaatgaagatacaaaatcgacagttag gtcaaagtcaccatgtttgttgacgaagaaagccatgcagacagttaagaaattggttcaggaggcaaagaagaaacata gttttgatcaacaacagaaagaggagataattgaagtgaaatctgatagctcaaaatgtgaatcagaaactgaccaatca gactcttcgaccaatcagaaatttcaatcacagaagaaaagtgctcttgaccttcttatgaaaaaggcaaaaaacaacat gactaaaattcaggaaaaatcagatgtcgctagcgaaacagttccccgtataagatatggtcctgggtatatgagttttc cacgcattgccaaggatggcagcaaatctgagacagcagggacatctgcagctgtgcaaccgtgtgggtcaacgaagcca gcagtttcggaaacacgcgcacctcttcctcctcctatttctaaagcatcaaatagatctgcaccaaagaggaaatgtcc tttctataaaaagatacctgtggatgccttcagctatggtgacgtaccaggatgtacaggttacatcctatctcacttcc attacgatcattacaatggacttaccaagcactttaccaaccctatatactgcagtcagataacggccaacttggtgctc tccaggattaaagttaaagaagaatttgtccatcctatacccatgaatacaccttgtctgattgacaatatcgaaatcac tatgttagaggcaaatcactgtccaggttctgttttgattcttttccgcctgccgagtggacgtgtcattctgcacacag gggacttcagggctgataaaagcatggaggattacccagaattcaaaggcgtcaaattctcacaactctacctagataca actgtgccaatggaaaacatcggcaaaagtgattga |
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Protein
| Protein ID | pfu_aug2.0_228.1_27072.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27072.t1 MEDEDDIWDYKSSVGKRKSKKLGSGQTNNASQLDADKSKPGQQRKKAKKTKRETTFKKMEKEPVITIEDASTPEKQTQTK SQRIASASKSSGKKSAIKSSQTPVRKIHEGFCPVCQMPFRILPLSPSWHVRECMESPNAEEECPDGASCDNTMESHYKEY AHQTLAMIRSTAEFSPTDENGTCKNGTKMSAKVRLEFSEIPVRSDHIAVSVEVKCLPKQNISTTMEKRDNDDDNDIISSP QDLDDFISSPQDISEIIDSMEPDDNKIVQNIDKNDDDDDENEDLSAILLEELIPTEDDESKNGSARKRKSLRGLDEDVSP KKQALISEYASSENNVSSQNSSGLSKAGRVSTVKGGEDSCTSGRKKKMAGSKRKSSQSDIDNFCSQKSDTRDEFGSPIDF IDLSQGDDGDDMTKVCKPIEKKITRSKRKSVKKLEEGVSPLKQAFLSNVGKNSGSQNCSQVLDDTGSKGKQSKEGSSQKV DADEIDLTPKDNSSQSTQTQKNKKRLSLSRKKSKTGKNDQNQTSLTSFFKCSSMPLETIAAKVKKEECFVISDSDSDANI KNVKDKEQTAPLEGNLSKNEDTKSTVRSKSPCLLTKKAMQTVKKLVQEAKKKHSFDQQQKEEIIEVKSDSSKCESETDQS DSSTNQKFQSQKKSALDLLMKKAKNNMTKIQEKSDVASETVPRIRYGPGYMSFPRIAKDGSKSETAGTSAAVQPCGSTKP AVSETRAPLPPPISKASNRSAPKRKCPFYKKIPVDAFSYGDVPGCTGYILSHFHYDHYNGLTKHFTNPIYCSQITANLVL SRIKVKEEFVHPIPMNTPCLIDNIEITMLEANHCPGSVLILFRLPSGRVILHTGDFRADKSMEDYPEFKGVKFSQLYLDT TVPMENIGKSD |
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