Gene
| Gene Model ID | pfu_aug2.0_228.1_27073 |
|---|---|
| Locus | scaffold228.1 : 260215 ... 274435 : + |
| To GenomeBrowser | scaffold228.1:260215..274435 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_6097.1_16843 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27073.t1 | 2 | 1 | DUF2043 | 424 | 473 | 3.5e-39 | 133.3 | 3.8e-06 | 0.028 | 14.5 |
| pfu_aug2.0_228.1_27073.t1 | 2 | 2 | DUF2043 | 550 | 655 | 3.5e-39 | 133.3 | 8.3e-38 | 6.2e-34 | 116.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27073.t1 | gi|524893246|ref|XP_005103141.1| | PREDICTED: UV-stimulated scaffold protein A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_228.1_27073.t1 | gi|18314542|gb|AAH21930.1| | KIAA1530 protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_228.1_27073.t1 | gi|158258759|dbj|BAF85350.1| | unnamed protein product [Homo sapiens] | 0.0 |
| pfu_aug2.0_228.1_27073.t1 | gi|556974096|ref|XP_005994949.1| | PREDICTED: UV-stimulated scaffold protein A [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_228.1_27073.t1 | gi|723541670|ref|XP_010311028.1| | PREDICTED: UV-stimulated scaffold protein A-like [Balearica regulorum gibbericeps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27073.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27073.t1 atggatcactcagaaatacgactctcagcattccagatgatcaatgaactctttgtcagatctcacatcttcagggaatt gctacttcagaattttcagatgtttattgagttaactgttgaaatggtggaggacatgaaatccagcctgatggaaatta aaaacagttttgaattacttcttccaacgttagataactttttcatcggaagtactgacattgatgcatcttcttctgca caaacagaaaatgacggttatgataaagatgccgagtctataaatagtgacacaaaaactacagtaaagtcacctgagtg tagagactgtcagaaaaatatgtctgaaaaaggtaaaacagaaataggtgaaaccttgaaatgtgagacatcagcaaaat gtcacacagagaaatcaagagatagtgatgtaaacagtagtgtcatgcatactccaaatggacatgatgatagtctgaaa caagatgattcatcaatagatgaagatgaagaagatgatgatgaggaggagaaggattttgaagatgttgcagacgaaat gtctagacaacactttatgcaggtccatggattaggtggtgcacattacaacatttccgtggatctcaccccaggtcctg tagaactaatggagaatgaggacacgtcagccatattaacacatctcaaagatcagtatcgtctattaacctcaaaattc cttcctgctgttcaaaaatggcttaatattctgtctaagcatggtggtagtcagacagatgttaagaaggcaatttacct taaaacagaactcacccaggccaaaaacaagtatcatgaccttaaagtcattccagaggaagagaaggtcgtcgataaag atagtgatgatgagtttgaggatgttccagagaaggaaggttatgaggctaccatcacaccacagaggaggaaagaaaat ggatcctcatcaagttcaaagtccaagaagagttccactgtaaccatggcaacaagtaatcctgaccaatcagaatcagc atcttcatctcagggaaagaagcataccaaaccgtattggagtattaataatgagttactggagcatgacgaggcggatc ccacatcgtttatagctaacttgaagaaaatcaaagcagaaacggcacacctctgcagcagttcaacagcctcggcaccc tcgacatcaaagcgttctaacagtactgattcagtagcagaaccagatgagaagaagaggaagttacttgaggatgctcc tgtagtcccctacggtgtggacctggaacactggggaaaccaggatagaatagaggcacccctggtggttaattcaaagt ccaagaagagttccacagtaaccatggcaacaagtaattctgaccaatcagaatcagcatcttcatctcagggaaagaag cataccaaaccgtattggagtattaataatgagttactggagcatgacgaggcggatcccacatcgtttatagctaactt gaagaaaatcaaagcagaaactgcacacctctgcagcagttcaacagcctcagcaacctcgacatcaaagcgttctaaca gtactgattcagtagcagaaccagatgagaagaagaggaagttagttgagaatgcccctgtagtaccctacggtgtggac ctggaacactggggaaaccaggataaaatagaggcaccgctggtggttaaatatgattcactgcacagattctggacacc taaagatgtagaacactgtcaagcagataaggaaggtattgcagagatgaccaagagagccatatcattcacagggaagt ttgagccggtaaagtggaaatgtcgagcacctctacccaatggcaagctatgtgagagaatggacagggtcaagtgtcct ttccatggtaagatagtccctcgagataaaatcggaaatccaaacgatccaaaccagccaccacaacccctgactgccga acaggaagtcaaagatcttataccagcctggcaggatccagaactccaggctgacattgaagcagccactggccttgacc ttggatcagggaggtcaaagggtaaaggtaaaggcaaggggaaaggaaagggcaaaggtaaagggaagcaacccaagtat ccaaaccttaccaacatcaaggcggtcacaaatactgcaagatcaagactggaaaacaaagtattcaacagcgtattctg catagacatgatagaagatttgtag |
|
Protein
| Protein ID | pfu_aug2.0_228.1_27073.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27073.t1 MDHSEIRLSAFQMINELFVRSHIFRELLLQNFQMFIELTVEMVEDMKSSLMEIKNSFELLLPTLDNFFIGSTDIDASSSA QTENDGYDKDAESINSDTKTTVKSPECRDCQKNMSEKGKTEIGETLKCETSAKCHTEKSRDSDVNSSVMHTPNGHDDSLK QDDSSIDEDEEDDDEEEKDFEDVADEMSRQHFMQVHGLGGAHYNISVDLTPGPVELMENEDTSAILTHLKDQYRLLTSKF LPAVQKWLNILSKHGGSQTDVKKAIYLKTELTQAKNKYHDLKVIPEEEKVVDKDSDDEFEDVPEKEGYEATITPQRRKEN GSSSSSKSKKSSTVTMATSNPDQSESASSSQGKKHTKPYWSINNELLEHDEADPTSFIANLKKIKAETAHLCSSSTASAP STSKRSNSTDSVAEPDEKKRKLLEDAPVVPYGVDLEHWGNQDRIEAPLVVNSKSKKSSTVTMATSNSDQSESASSSQGKK HTKPYWSINNELLEHDEADPTSFIANLKKIKAETAHLCSSSTASATSTSKRSNSTDSVAEPDEKKRKLVENAPVVPYGVD LEHWGNQDKIEAPLVVKYDSLHRFWTPKDVEHCQADKEGIAEMTKRAISFTGKFEPVKWKCRAPLPNGKLCERMDRVKCP FHGKIVPRDKIGNPNDPNQPPQPLTAEQEVKDLIPAWQDPELQADIEAATGLDLGSGRSKGKGKGKGKGKGKGKGKQPKY PNLTNIKAVTNTARSRLENKVFNSVFCIDMIEDL |
|