Gene
| Gene Model ID | pfu_aug2.0_228.1_27078 |
|---|---|
| Locus | scaffold228.1 : 362604 ... 371458 : + |
| To GenomeBrowser | scaffold228.1:362604..371458 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_301.1_14967 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27078.t1 | 3 | 1 | DEAD | 45 | 143 | 6.8e-28 | 97.2 | 4.1e-27 | 2.0e-23 | 82.7 |
| pfu_aug2.0_228.1_27078.t1 | 2 | 1 | Helicase_C | 104 | 128 | 1.2e-27 | 95.5 | 1.3 | 6300.0 | -2.9 |
| pfu_aug2.0_228.1_27078.t1 | 3 | 2 | DEAD | 143 | 182 | 6.8e-28 | 97.2 | 1.1e-05 | 0.054 | 12.9 |
| pfu_aug2.0_228.1_27078.t1 | 2 | 2 | Helicase_C | 249 | 325 | 1.2e-27 | 95.5 | 7.6e-31 | 3.8e-27 | 93.9 |
| pfu_aug2.0_228.1_27078.t1 | 3 | 3 | DEAD | 253 | 278 | 6.8e-28 | 97.2 | 0.92 | 4500.0 | -3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27078.t1 | gi|617560031|ref|XP_007515835.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X1 [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_228.1_27078.t1 | gi|674033838|ref|XP_008835699.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_228.1_27078.t1 | gi|533127743|ref|XP_005379029.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X1 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_228.1_27078.t1 | gi|555955869|ref|XP_005890089.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X1 [Bos mutus] | 0.0 |
| pfu_aug2.0_228.1_27078.t1 | gi|585668460|ref|XP_006888481.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X1 [Elephantulus edwardii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27078.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27078.t1 atgaatgtcaatttagtgactttaacaaaacagccagtagagcttcagtctcatcagagacttctggtttacatcggagt tgtggatgtactgtgtgaggcatgtgaacgattgaaatggaaatctccgagcaagattcaaagggaagcaatacctgttg ctttacaaggttcagacataatcggcctggcggagacaggatcagggaagactggagcgtttgccatacctatacttcag aagctgctggacagtccacagagactgtatgccctaatactcacacctaccagggagttagcattccaaatatcagagca gtttgaggcattgggttccgctattggagttaagtgtgctgtggtagttggtggtatagatatgatgtcacagtctctca tgttggctaaaaaaccacatataatcatagatagaatattaaatatggactttgaacaagaggtagacaagatactgaaa gttatacctagagaaagatcaacctatttatactctgccacaatgaccaaaaaggtagctaagttacagagagcttcctt acaaaaccctgtgaaagtagaagtatcatcaaaataccagaccgtggataaactacaacaatattacctgtttgttcctg ctaaatttaaggatgtatatctggtatctgtattgaatgagttagctggtaactccttcatggttttcaccagtacatgt gctaacacacagcgaacagctctgatgttgaggaaccttggattaacagctataccattacatggacagatgagtcagtc taaaaggttgggttctttgaacaagttcaaaagtaagagtcgttccatcctcattgctactgatgtagctagcagaggct tagacataccacatgttgatgtagtgattaactttgacatccccacccactcaaaagattacatacacagggtggggcgt acagccagggcggggcgatcaggcaaagccatcacatttgtctcccaatatgatgtggagctctatcagagaattgaaca tttgattggaaagaaactccccttatataaaacagaggagcaagaagtaatgcagcttatggagagggtaacagaggctc agagatacgccaaaatggaaatgagtgaatcatcagggaggaaaggaaagaagagaggaaagagagatgatgatgatgat aatgatgatacagaggaggcactaggagtcaggaagaagtttaaaaagaaaaagaagcgatag |
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Protein
| Protein ID | pfu_aug2.0_228.1_27078.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27078.t1 MNVNLVTLTKQPVELQSHQRLLVYIGVVDVLCEACERLKWKSPSKIQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQ KLLDSPQRLYALILTPTRELAFQISEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIDRILNMDFEQEVDKILK VIPRERSTYLYSATMTKKVAKLQRASLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFKDVYLVSVLNELAGNSFMVFTSTC ANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGR TARAGRSGKAITFVSQYDVELYQRIEHLIGKKLPLYKTEEQEVMQLMERVTEAQRYAKMEMSESSGRKGKKRGKRDDDDD NDDTEEALGVRKKFKKKKKR |
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