Gene
| Gene Model ID | pfu_aug2.0_228.1_27079 |
|---|---|
| Locus | scaffold228.1 : 372034 ... 377066 : + |
| To GenomeBrowser | scaffold228.1:372034..377066 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_7997.1_31507 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27079.t1 | 1 | 1 | Helicase_C | 16 | 92 | 4.4e-28 | 96.9 | 5.4e-32 | 8.1e-28 | 96.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27079.t1 | gi|149049185|gb|EDM01639.1| | DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_228.1_27079.t1 | gi|759166522|ref|XP_011374338.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_228.1_27079.t1 | gi|13905112|gb|AAH06843.1| | Ddx47 protein [Mus musculus] | 0.0 |
| pfu_aug2.0_228.1_27079.t1 | gi|33338224|gb|AAQ13709.1|AF190165_1 | MSTP162 [Homo sapiens] | 0.0 |
| pfu_aug2.0_228.1_27079.t1 | gi|488537496|ref|XP_004460406.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Dasypus novemcinctus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27079.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27079.t1 atggttttcaccagtacatgtgctaacacacagcgaacagctctgatgttgaggaaccttggattaacagctataccgtt acatggacagatgagtcagtctaaaagattgggttctttgaacaagttcaaaagtaagagtcgttccatcctcattgcta ctgatgtagctagcagaggcttagacataccacatgttgatgtagtgattaactttgacatccccacccactccaaagat tacatacacagggtggggcgtacagccagggcggggcgatcaggcaaagccatcacatttgtctcccaatatgatgtgga gctctatcagagaattgaacatttgattggaaagaagctccccttgtataaaacagaggagcaagaagtaatgcagctta tggagagggtaacagaggctcagagatacgccaaaatggaaatgagtgaatcatcagggcggaaaggaaagaagagagga aagagagatgatgatgatgataatgatgatacagaggaggcactaggagtcaggaagaagtttaagaagaaaaagaagcg atag |
|
Protein
| Protein ID | pfu_aug2.0_228.1_27079.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27079.t1 MVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKD YIHRVGRTARAGRSGKAITFVSQYDVELYQRIEHLIGKKLPLYKTEEQEVMQLMERVTEAQRYAKMEMSESSGRKGKKRG KRDDDDDNDDTEEALGVRKKFKKKKKR |
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