Gene
| Gene Model ID | pfu_aug2.0_229.1_30459 |
|---|---|
| Locus | scaffold229.1 : 27056 ... 43870 : + |
| To GenomeBrowser | scaffold229.1:27056..43870 |
| Genes list of scaffold | scaffold229.1 |
| Synonym | pfu_aug1.0_49219.1_48691 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_229.1_30459.t1 | 1 | 1 | Laminin_G_3 | 115 | 283 | 2.2e-17 | 63.7 | 7.4e-21 | 3.7e-17 | 63.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_229.1_30459.t1 | gi|383855622|ref|XP_003703309.1| | 0.0 | |
| pfu_aug2.0_229.1_30459.t1 | gi|512896184|ref|XP_004923850.1| | 0.0 | |
| pfu_aug2.0_229.1_30459.t1 | gi|746848004|ref|XP_011054393.1| | PREDICTED: neurobeachin isoform X4 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_229.1_30459.t1 | gi|752887195|ref|XP_011261462.1| | PREDICTED: neurobeachin [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_229.1_30459.t1 | gi|260828388|ref|XP_002609145.1| | hypothetical protein BRAFLDRAFT_249070 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_229.1_30459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_229.1_30459.t1 atgctcagacttctcaccaactgtccaatcacactacaggcagaaatatggagtgttttcacagccatgttgaaaaagag tcgcaggaatctacaggcctgtacagaagtaaccttgatagagcacactctcaacctgatcaaggactctgatgatgtaa tagcagatttactagttgagatgttggccacccttgctagttatagtatctctgtcagggaactcaaaatgttgttcagt ctactgaaagctgtggatggtaaatggcaaagacactcggtgaagttgttgaatgtactagaggtgatgccacagagaga cggccctgatgaattcttcatgttccctggcaggaaaggatcttacataggcctaccaccaatcaagacctggccgtacc agaatggatggacgtttacatgctggatccgcctggatcctgtaacgggggccatagtagaaagagaaagaccatatctg tattgtttcaaaaccaacaaaggagtgggttactccgcccattttctaggaaattctctggtcataacaaccatgaaaat caaaggcaaaggattccaacattgtgtcaagtatgatttccaacctagaaagtggtacatggtatcagtggtccatgttt ataacagatggagtaagtcagaactgagatgttatgtcaatggagaactggcctcttttgctgatatatcatggcttgtc agtaccaacgatccatttgacaagtgttacctaggagccagtgctgagggagagactgaccatatgttctgtggtcagat gtccactgtgtacttgttcagtgaatccttggctccacaacagatagctgctatttataaactaggcccaagctacaaga gtcagtttagatttgaaaatgaaaatggccaaggaggagtagaagtggataagaagctggtatatgacgggaaattgaca tcagccatagtgtttatgtataatcctatcgcctgtgatggccagctgtgtttagagtcctctcctaaaggcaatacgcc ccattttctacatgtacagcatgctcttatgtcaggggaagtgaaggcagtaatcacacattccatatttagtgttctac attccctaggtggtgttcaggttttgtttcccatgtttggccagctggactaccctgtactaaggggatctgaccagccc tgtgaagtggactacactatatgttccaagttgatgtgtatcctgtgtaacctgatggacagttctatcaccatacaaca acaaatgttacagaataaaggcttcttggtcataggatatttattggaaaaggcgagcagagatcatgtgacccctgagg tgttggaatcattcctgaagttgacccagtttctggtagagttaccgtcgggcagtatgttgttgaagcacctatttgac catatcttgtttaaccctagtctctggatacactcctctgtagaggtacaaacgaagttgtactgttacctagccacaga atttataaacaatgctcagatttacaacagtatccgtcgtgttagtgcagtacttcaaactatgcacactttaaagctgt attactgggtggttaacccgtttgatagatctggaatcataccgaaaggaacaggtattgtttga |
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Protein
| Protein ID | pfu_aug2.0_229.1_30459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_229.1_30459.t1 MLRLLTNCPITLQAEIWSVFTAMLKKSRRNLQACTEVTLIEHTLNLIKDSDDVIADLLVEMLATLASYSISVRELKMLFS LLKAVDGKWQRHSVKLLNVLEVMPQRDGPDEFFMFPGRKGSYIGLPPIKTWPYQNGWTFTCWIRLDPVTGAIVERERPYL YCFKTNKGVGYSAHFLGNSLVITTMKIKGKGFQHCVKYDFQPRKWYMVSVVHVYNRWSKSELRCYVNGELASFADISWLV STNDPFDKCYLGASAEGETDHMFCGQMSTVYLFSESLAPQQIAAIYKLGPSYKSQFRFENENGQGGVEVDKKLVYDGKLT SAIVFMYNPIACDGQLCLESSPKGNTPHFLHVQHALMSGEVKAVITHSIFSVLHSLGGVQVLFPMFGQLDYPVLRGSDQP CEVDYTICSKLMCILCNLMDSSITIQQQMLQNKGFLVIGYLLEKASRDHVTPEVLESFLKLTQFLVELPSGSMLLKHLFD HILFNPSLWIHSSVEVQTKLYCYLATEFINNAQIYNSIRRVSAVLQTMHTLKLYYWVVNPFDRSGIIPKGTGIV |
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