Gene
| Gene Model ID | pfu_aug2.0_229.1_30465 |
|---|---|
| Locus | scaffold229.1 : 204107 ... 211281 : + |
| To GenomeBrowser | scaffold229.1:204107..211281 |
| Genes list of scaffold | scaffold229.1 |
| Synonym | pfu_aug1.0_7638.1_09602 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_229.1_30465.t1 | 5 | 1 | WD40 | 39 | 50 | 7.1e-13 | 47.9 | 1.1 | 7900.0 | -3.0 |
| pfu_aug2.0_229.1_30465.t1 | 5 | 2 | WD40 | 118 | 134 | 7.1e-13 | 47.9 | 0.016 | 120.0 | 2.8 |
| pfu_aug2.0_229.1_30465.t1 | 5 | 3 | WD40 | 138 | 179 | 7.1e-13 | 47.9 | 1.5e-09 | 1.1e-05 | 25.1 |
| pfu_aug2.0_229.1_30465.t1 | 5 | 4 | WD40 | 199 | 232 | 7.1e-13 | 47.9 | 8.7e-08 | 0.00065 | 19.4 |
| pfu_aug2.0_229.1_30465.t1 | 5 | 5 | WD40 | 263 | 288 | 7.1e-13 | 47.9 | 0.033 | 240.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_229.1_30465.t1 | gi|676459510|ref|XP_009055324.1| | hypothetical protein LOTGIDRAFT_153142, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_229.1_30465.t1 | gi|242001064|ref|XP_002435175.1| | neurobeachin, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_229.1_30465.t1 | gi|391339034|ref|XP_003743858.1| | PREDICTED: neurobeachin-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_229.1_30465.t1 | gi|641668330|ref|XP_008184417.1| | PREDICTED: neurobeachin isoform X1 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_229.1_30465.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_229.1_30465.t1 atgatgttttccacagttcaggacgatgtgtgcatgattatgaagtttctatctaattcacctgtaactcatatcgcggc aaacacccaccctgccgttcctactcctgcagtcacaactattacatgtaatcacaacttcgcaatcaacaaatggaatt caaattatcaacaccaaggaactcctacaaatttttcatcagaaaaaccaccagatgctcaggtcaacctccctctagcc atggatcaattactagtcttaaacaccggtttacatcgacgtaccttaggagataactttgacgagagaatcaaaccgac acattccagttttgtgacgtctgctgacaataggttcatctttgcctgtggtttctgggacaaaagttttagattattca atactgattcagggaaaattctgcaggttgtgtatgggcattttgatgttgtgacatgtataaccagatctgaatgtaat ctgaaccaggattgttatgtgataacgggctctaaagatagcacagccatggtgtggatgttcacctcacgtaaccaggc catcattggtgataacggaagtttagagcaccccactcctaaggccacattgacaggacatgagtcagaggtccagtgtg tggctgtgttagctgaacttggcctcgtcttcagtggatcaaaaagtaagtctgcaatgattttaagtcgagatggacag tacatgatgatgggaggaagcagtggagtggtggaagtttggaggtcacatgacctgacgctactttacacgtacccacc gtgtgatagcagtatctgctctctggcactcacacatgatcacaaattcttgctagctggtctagccactggatgtctac tagtgtttaatatagacttcaacaaatggcatcacgaataccaggagagtatacaaatcacaagatga |
|
Protein
| Protein ID | pfu_aug2.0_229.1_30465.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_229.1_30465.t1 MMFSTVQDDVCMIMKFLSNSPVTHIAANTHPAVPTPAVTTITCNHNFAINKWNSNYQHQGTPTNFSSEKPPDAQVNLPLA MDQLLVLNTGLHRRTLGDNFDERIKPTHSSFVTSADNRFIFACGFWDKSFRLFNTDSGKILQVVYGHFDVVTCITRSECN LNQDCYVITGSKDSTAMVWMFTSRNQAIIGDNGSLEHPTPKATLTGHESEVQCVAVLAELGLVFSGSKSKSAMILSRDGQ YMMMGGSSGVVEVWRSHDLTLLYTYPPCDSSICSLALTHDHKFLLAGLATGCLLVFNIDFNKWHHEYQESIQITR |
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