Gene
| Gene Model ID | pfu_aug2.0_23.1_10118 |
|---|---|
| Locus | scaffold23.1 : 429666 ... 441608 : + |
| To GenomeBrowser | scaffold23.1:429666..441608 |
| Genes list of scaffold | scaffold23.1 |
| Synonym | pfu_aug1.0_237.1_50737 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_23.1_10118.t1 | 1 | 1 | Rhomboid | 555 | 612 | 1.7e-09 | 37.8 | 2.4e-13 | 3.6e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_23.1_10118.t1 | gi|524883010|ref|XP_005098140.1| | PREDICTED: uncharacterized protein LOC101855789 [Aplysia californica] | 1.96182e-44 |
| pfu_aug2.0_23.1_10118.t1 | gi|156406677|ref|XP_001641171.1| | predicted protein [Nematostella vectensis] | 3.0e-36 |
| pfu_aug2.0_23.1_10118.t1 | gi|542188153|ref|XP_005470253.1| | PREDICTED: inactive rhomboid protein 2-like isoform X2 [Oreochromis niloticus] | 1.0e-32 |
| pfu_aug2.0_23.1_10118.t1 | gi|542188151|ref|XP_005470252.1| | PREDICTED: inactive rhomboid protein 2-like isoform X1 [Oreochromis niloticus] | 4.0e-32 |
| pfu_aug2.0_23.1_10118.t1 | gi|734636020|ref|XP_010746627.1| | PREDICTED: inactive rhomboid protein 2 [Larimichthys crocea] | 2.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_23.1_10118.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10118.t1 atggattctgtgctgaggagatggggaaaacatttccaatctggactacagaattttggatctttttttggactttggac caagtataaggaagaggaagagaaaaaaatttggaacaagaaggttcacaagaaaattaagaaaggatctcttcttcctg ggccaggccatgtctttgatagaaagtttaacccaaaagatgtgcagatatctcatcaagtgaagaaatatgtaaagcag gtagtctttacagatatcattagaggacatgagatttcttctggtttgttgaaagatgacgttgatttgttagaatacta taatgatttgtatgatgaagattcatcagaggaggaggaagaagatgaagattcaagaagtctagccgataatgacatag aaagcaacaaagacgtagaagtcatcgaagatggaaaatttcagatgtcgcaattcaaagagatggagggacacttcgat aaaaaagttacatttgtcactattgaagatacagacaaaaatcagccaggtcataatcatgcaaaggctgaaaatggaac agggacagaaaacaatagcctgtacccatctccagaggatgatgatatacctgagtgtcagaaggagggggagttttatg atggcatagctcaaccagttactgagcagatcaaaagctatgaatccttgagtgtagatgatacatggtgtcagcttgag gattcattggtgtatggaaaagatgctctcaaacattataatctctatgttcagatagaaaataaagttagggtgcatga actggagatggcaaagcagaaagtcaaggaaaagcttaaatggagaatcaaacatattgaagaaatcatttccaaagcca gagcatattacaagaaaccatctggtaaagcagagaaagaatggaaagacctcaaacaatccatcaagaaagagagtaga accagtttgaaaagtcaaacaaacattcgttataagttggctaaccttcatgaacattggccagttttcacattcactat atcttttctacagctagtagcgttagtggtgctctgtggtttgggtggattgaccagtataggactagaaccacagctac aactgaagagtggtgtggttacattccatggtatagagacggtacatacctggagcataccaaatatgtggatagggccc tctcaaagacagctgattgctttgggagcattttttgcgccttgtgtgagagaggattatgggatacagctgattgctgc caaatccaactacagccaatcggatcctatcggatgttgtgaaatggcaacaagaaactcggccgccacaacaacagaat atgaatgtaaggaactgtcacatggagctggaacatggaatagccagtatgtgtgtagtgctcgtcccacaggacaaaac agtattctccataatctaaagccgtgctgtattgatttaaagggaacctgtctcctactcacacacgctcactgtgtttt ccttggaggagtctttcataaaagtggaaaagaaaattgtagacaggtagtttttagctcacctcatgaaataaattgtc tgaaagaaatctgtaaaccaggaatagtggagtctgacaaggacagaccttggttagccgttaatcctgctcagtggtgg aggttgccactctctttactctatcaccaaggcattttacatgtattgataattcttactgttcagctagcattgataag acagattgagaagactataggatggctaagagttctaatcatctattgtgtaggtggtttagcaggattactcatggaac tgaacaatgaatttgatcattcatcttcagatggcatctattttaacaccttactccccacacgttggagctacggggtc actgtattcaatgttcggcctgcttactgtggaactcgttcacttctggagggttatcaagcatccagtaagggagggcc ttaa |
|
Protein
| Protein ID | pfu_aug2.0_23.1_10118.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10118.t1 MDSVLRRWGKHFQSGLQNFGSFFGLWTKYKEEEEKKIWNKKVHKKIKKGSLLPGPGHVFDRKFNPKDVQISHQVKKYVKQ VVFTDIIRGHEISSGLLKDDVDLLEYYNDLYDEDSSEEEEEDEDSRSLADNDIESNKDVEVIEDGKFQMSQFKEMEGHFD KKVTFVTIEDTDKNQPGHNHAKAENGTGTENNSLYPSPEDDDIPECQKEGEFYDGIAQPVTEQIKSYESLSVDDTWCQLE DSLVYGKDALKHYNLYVQIENKVRVHELEMAKQKVKEKLKWRIKHIEEIISKARAYYKKPSGKAEKEWKDLKQSIKKESR TSLKSQTNIRYKLANLHEHWPVFTFTISFLQLVALVVLCGLGGLTSIGLEPQLQLKSGVVTFHGIETVHTWSIPNMWIGP SQRQLIALGAFFAPCVREDYGIQLIAAKSNYSQSDPIGCCEMATRNSAATTTEYECKELSHGAGTWNSQYVCSARPTGQN SILHNLKPCCIDLKGTCLLLTHAHCVFLGGVFHKSGKENCRQVVFSSPHEINCLKEICKPGIVESDKDRPWLAVNPAQWW RLPLSLLYHQGILHVLIILTVQLALIRQIEKTIGWLRVLIIYCVGGLAGLLMELNNEFDHSSSDGIYFNTLLPTRWSYGV TVFNVRPAYCGTRSLLEGYQASSKGGP |
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