Gene
| Gene Model ID | pfu_aug2.0_23.1_10120 |
|---|---|
| Locus | scaffold23.1 : 514766 ... 530637 : + |
| To GenomeBrowser | scaffold23.1:514766..530637 |
| Genes list of scaffold | scaffold23.1 |
| Synonym | pfu_aug1.0_13193.1_46612 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glutaredoxin-3 | GO:0043226 GO:0044057 GO:0065008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_23.1_10120.t1 | 1 | 1 | Thioredoxin | 76 | 122 | 9.9e-06 | 25.1 | 1.5e-08 | 2.4e-05 | 23.9 |
| pfu_aug2.0_23.1_10120.t1 | 4 | 1 | Glutaredoxin | 81 | 102 | 1.8e-24 | 85.5 | 1.1 | 1800.0 | -1.1 |
| pfu_aug2.0_23.1_10120.t1 | 4 | 2 | Glutaredoxin | 160 | 174 | 1.8e-24 | 85.5 | 1.6 | 2600.0 | -1.5 |
| pfu_aug2.0_23.1_10120.t1 | 4 | 3 | Glutaredoxin | 174 | 193 | 1.8e-24 | 85.5 | 3.3e-05 | 0.054 | 13.4 |
| pfu_aug2.0_23.1_10120.t1 | 4 | 4 | Glutaredoxin | 232 | 296 | 1.8e-24 | 85.5 | 3.6e-22 | 5.9e-19 | 67.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_23.1_10120.t1 | gi|475506756|ref|NP_001264313.1| | glutaredoxin-3 [Gallus gallus] | 0.0 |
| pfu_aug2.0_23.1_10120.t1 | gi|733898394|ref|XP_010713263.1| | PREDICTED: glutaredoxin-3 [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_23.1_10120.t1 | gi|699692860|ref|XP_009905443.1| | PREDICTED: glutaredoxin-3 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_23.1_10120.t1 | gi|704190843|ref|XP_010138855.1| | PREDICTED: glutaredoxin-3, partial [Buceros rhinoceros silvestris] | 0.0 |
| pfu_aug2.0_23.1_10120.t1 | gi|727056034|ref|XP_010406780.1| | PREDICTED: glutaredoxin-3 [Corvus cornix cornix] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_23.1_10120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10120.t1 atggctacctacccaccagggcttccttgggtccaggataaactttctaagttggccctgaactcttctggtaagacaga ggcggggatctccaacaacgcccgcagcacccatagcaaatccccaaaacactcaatgcaaaacacagagcagacacgca cagagagagacgcaaaagtgatccacgactgtactgtggatgatatgttctacgagcttacaggacgtcagcttgaggca gaagatttaccggagctgtcagaaaaatacgagatctcagctgttccaaccttcatctttataaagaacaaggaggcggt agacaggatagatggcgctaaagctgcagaggtcaccaaaaaggttaaatttctgtcctctcccacctccagtgtcccga gtaccaccacacagcatgaagaacccccgggagaagatttagacgtacgactgaagaagcttatcaatgcagcacctgta atgctattcatgaagggaaacccagatcaacctcgatgtggactgaaaaagttttcaaattggccaacatatccccagtt atatgccaagggtgagctgcttgggggactggatattgtcaaagagttagtcgagtcaggagacctggagtcagaactcc ctaaacaagaaagtttggaagacagattgaagtcactgatcaacaaagcccctgtaatgttatttatgaagggggatcca gaaactcccaggtgtggattcagtaaacaaactgtagctctgcttggtgagacaggtgtgaagtatgagacgtttgacat tttgacagatgatgaagtcagacaaggattaaagaccttctcgaattggccaacatttccacaactttatgttaaaggcg agctgattggtggacttgatatattgaaggaattacatgagtcagatgaacttactggaatgttgaaggaagcacaatga |
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Protein
| Protein ID | pfu_aug2.0_23.1_10120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10120.t1 MATYPPGLPWVQDKLSKLALNSSGKTEAGISNNARSTHSKSPKHSMQNTEQTRTERDAKVIHDCTVDDMFYELTGRQLEA EDLPELSEKYEISAVPTFIFIKNKEAVDRIDGAKAAEVTKKVKFLSSPTSSVPSTTTQHEEPPGEDLDVRLKKLINAAPV MLFMKGNPDQPRCGLKKFSNWPTYPQLYAKGELLGGLDIVKELVESGDLESELPKQESLEDRLKSLINKAPVMLFMKGDP ETPRCGFSKQTVALLGETGVKYETFDILTDDEVRQGLKTFSNWPTFPQLYVKGELIGGLDILKELHESDELTGMLKEAQ |
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