Gene
| Gene Model ID | pfu_aug2.0_231.1_03838 |
|---|---|
| Locus | scaffold231.1 : 80988 ... 101315 : - |
| To GenomeBrowser | scaffold231.1:80988..101315 |
| Genes list of scaffold | scaffold231.1 |
| Synonym | pfu_aug1.0_10609.1_02949 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| structural maintenance of chromosomes protein 4 | GO:0000166 GO:0005829 GO:0007076 GO:0043229 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_231.1_03838.t1 | 1 | 1 | SMC_N | 46 | 1211 | 0.0 | 226.2 | 0.0 | 0.0 | 218.7 |
| pfu_aug2.0_231.1_03838.t1 | 3 | 1 | AAA_21 | 71 | 272 | 3.1e-11 | 43.7 | 1.4e-07 | 0.00026 | 21.0 |
| pfu_aug2.0_231.1_03838.t1 | 3 | 2 | AAA_21 | 421 | 497 | 3.1e-11 | 43.7 | 0.8 | 1500.0 | -1.2 |
| pfu_aug2.0_231.1_03838.t1 | 2 | 1 | SMC_hinge | 578 | 694 | 6.7e-28 | 97.0 | 1.1e-30 | 2.1e-27 | 95.4 |
| pfu_aug2.0_231.1_03838.t1 | 2 | 2 | SMC_hinge | 905 | 953 | 6.7e-28 | 97.0 | 1.7 | 3100.0 | -2.0 |
| pfu_aug2.0_231.1_03838.t1 | 3 | 3 | AAA_21 | 1044 | 1188 | 3.1e-11 | 43.7 | 8.2e-10 | 1.5e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_231.1_03838.t1 | gi|524879479|ref|XP_005096414.1| | PREDICTED: structural maintenance of chromosomes protein 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_231.1_03838.t1 | gi|156382738|ref|XP_001632709.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_231.1_03838.t1 | gi|690426472|ref|XP_009332196.1| | PREDICTED: structural maintenance of chromosomes protein 4 [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_231.1_03838.t1 | gi|301607379|ref|XP_002933283.1| | PREDICTED: structural maintenance of chromosomes protein 4 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_231.1_03838.t1 | gi|686584509|ref|XP_009277256.1| | PREDICTED: structural maintenance of chromosomes protein 4 [Aptenodytes forsteri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_231.1_03838.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03838.t1 atggaagtggatgaaacaccagaatcaagcgattcccaaccacgccccgtgaatttagaaacagactttggtcctataga agtgcctccagcccctcagacagtagctacatacgaagttaacggaccaaggttgatgatcacgcatattcaaaatgaaa acttcaaatcctatgcaggaatcagaaccttgggaccttttcataaaagtttcacatctattgttggaccaaatggaagt ggaaagtccaatgtgatagactccatgttgtttgtttttggatttagagcaaacaaaattagatccaagaaaataagtgt tttaattcatgacagtgaaaaccataaaaatgtggagtcgtgtacagtcagtgtacatttccagaaaatcattgatactg gggatggtgaggatgaatacacggtggtaccaggctcacagtttgtggtgtcccgtaccgcttacagggacaacagctct cattacagtattgacggcaagaaaaagacgtttaaagatgtggccaccctgctgcgggccagtgggatcgatctggacca caatagattccttattcttcagggagaagtcgaacagatagctatgatgaaacccaaaggacaaacggagaacgacgatg gaatgctagaattcctagaggatattataggaagtaacaggttcaaagaaccgatagaagtgctagctaaacgtgtggag actctgaatgaaatgagaggagagaagttgaacagagtgaaagctgtggagaaagagaaggatgacctggaggactctaa gaatgaagctgtggaataccttaccatggaaaatgaaattgttcagctaaaaaataaactacatcagaaatatatatacg agtgtgcagaaagtgagaggaaagcccaagaagagtatgataaaataaacgagggaatgaaggaggtcaatgaaaagatg aaggccatacaagatggaaagaaagaaaaagacaaggaactgaaaaatatatacaaacaatatgaacactttgtgaagga aactgaagatacaaaagaaaagtttgccgagtgtgagaagcaggacgtaaaatgcagagaggatctgaagcacactaagg caaaatccaagaaactagacaagcaactagaacaagaaaagaaaagggttgaagaattgaagttggtacctgatgaagct gccaaatctattgaaggctttcagaaaaatctggaaaagttagaagtggagaaaaagaaagaagatgaaaaactggcagc tgtgatggaaagtctcaaaacagaaactaaggggctccaagaagagaaagattcaaaggaagaagagcttctcggtttaa agaaaacggtcaacgaaacaaagtccactttgagtgtagccaaaagtgaattggacatctacctcagtaatcagcagagt gagaccaacagactgaaagacttacagagaaaactggagaaagctgaggtcaccctgaaagacagaaacaatgaaattac tcagattgacaagaatttaccagaagtccagaagatggtagagaaagcgaaagtagactaccaacaagctgtggaagctg aggtcaaggtcactaatcagctcagaggcatgagaaataaagttgaggaggcaaaaagttctatgaatgcagcgagaagt cagggtaaagtgataggggctctgatggacctgaagaaatctggtaggatgcctggtgtacatgggagactgggagactt gggagcaatagacaataagtacgatgtggctatatccacagcatgtggagctctagaccatattgtggtggatagcatta acacggctcaaaaatgtgtggagttcctgaagaaaaacaacgtaggatccgcaacattcattggccttgacaaaatggca aaatggaaggaccatgctcaaaggaaaattcagacaccagagagtgtacctagattgtttgatttggttaagacaaaaga cacccagattttacctgccttttattttgctctccgtgatactttggtggctgatgaccttgatcaggcgacgcggatag cttacggcaaaaatagatatagagtggtcactctacagggacagctaatcgaccagtcaggaacaatgagtgggggtggt aaatctgtgtgtaagggaaggatgggctcatcactggtatctgaagtggatcccaaggagctatctaacatggaaaatag tctggaaaagcttgtattggaagctcagaatagcaggtctagtaaagaaagactggaagaccttatacatcaacaggaaa aagatgttacttgtatgaaacataaacatgagaaaagctcaatggaaaaaaaggctctggaggagcaggtgaccatgttg aagacacagattaaggaacaagaggcccgggtgaaggctgcagctcctgacgagaaacagttaaaggaactggagaaaaa agtcacccaatatcagaaaggaggatccaagatgaaagcagctcagaaaaatgtggatgctgtgaacagtaagatagacc aagtgactggacagattacaaaggctcaagtaggcgtcaagacggcagaaaggaatttaaagaaagcagaagaaaaagtg aaatcagtagaggaagaaatagaagaaaccaaggagaagttggtagaattagagaaattcttcaaacagctggaagagga tgctactaaagtcttagaggcttatcaagcagcccaggataaaatgaaggagtcggaggttgccctgaatgccatgaggg aggaggtcggtaaactggaggaggatgagaacaacctacagaaggacgtagtggacgtacgacacgagctggacaaaata caagacatcatcaaaaccaaccagaaaaaaatcaaacactggaaaaaagagatggacagtctgaagttgacacctataga tggtaaggaggctggtgaacttaaagaattatcaagtgaagagcttgaggatgtagacatagagaaaacctcctatgaga tcaccattatagaggaaagtctggctaagatgaaacccaatatggctgccatagctgaatataggaaaaaggaagagctg tacctacagagggtaggagagcttgacaaaatcactgatctacgggacaaccagaggaagtattttgaagacctccgtaa acaacggctggacgagttcatggcaggattcagtgtaattactaataaactaaaggagatgtatcagatgataacgctcg gaggggatgccgagttagaactcgtggactccctcgatcctttctcagagggtatagttttcagtgttcgaccacccaag aagtcttggaagaacatctctaacctgtccggaggagagaagacattaagttccctggccctggtgtttgctcttcatca ctataaaccaacaccactgtatgttatggacgagatagatgctgctctcgacttcaagaacgtatccatcgtagccaatt atatcaaggcgaggacgaggaatgcccagtttattattatatcactcaggaataatatgtttgagttagcggatagactt gtggggatttacaaaacggacaactgtaccaaatctgtgacaataaatcccagcaaactcagcctacccttacaggatgt ggatgtaaacacttga |
|
Protein
| Protein ID | pfu_aug2.0_231.1_03838.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03838.t1 MEVDETPESSDSQPRPVNLETDFGPIEVPPAPQTVATYEVNGPRLMITHIQNENFKSYAGIRTLGPFHKSFTSIVGPNGS GKSNVIDSMLFVFGFRANKIRSKKISVLIHDSENHKNVESCTVSVHFQKIIDTGDGEDEYTVVPGSQFVVSRTAYRDNSS HYSIDGKKKTFKDVATLLRASGIDLDHNRFLILQGEVEQIAMMKPKGQTENDDGMLEFLEDIIGSNRFKEPIEVLAKRVE TLNEMRGEKLNRVKAVEKEKDDLEDSKNEAVEYLTMENEIVQLKNKLHQKYIYECAESERKAQEEYDKINEGMKEVNEKM KAIQDGKKEKDKELKNIYKQYEHFVKETEDTKEKFAECEKQDVKCREDLKHTKAKSKKLDKQLEQEKKRVEELKLVPDEA AKSIEGFQKNLEKLEVEKKKEDEKLAAVMESLKTETKGLQEEKDSKEEELLGLKKTVNETKSTLSVAKSELDIYLSNQQS ETNRLKDLQRKLEKAEVTLKDRNNEITQIDKNLPEVQKMVEKAKVDYQQAVEAEVKVTNQLRGMRNKVEEAKSSMNAARS QGKVIGALMDLKKSGRMPGVHGRLGDLGAIDNKYDVAISTACGALDHIVVDSINTAQKCVEFLKKNNVGSATFIGLDKMA KWKDHAQRKIQTPESVPRLFDLVKTKDTQILPAFYFALRDTLVADDLDQATRIAYGKNRYRVVTLQGQLIDQSGTMSGGG KSVCKGRMGSSLVSEVDPKELSNMENSLEKLVLEAQNSRSSKERLEDLIHQQEKDVTCMKHKHEKSSMEKKALEEQVTML KTQIKEQEARVKAAAPDEKQLKELEKKVTQYQKGGSKMKAAQKNVDAVNSKIDQVTGQITKAQVGVKTAERNLKKAEEKV KSVEEEIEETKEKLVELEKFFKQLEEDATKVLEAYQAAQDKMKESEVALNAMREEVGKLEEDENNLQKDVVDVRHELDKI QDIIKTNQKKIKHWKKEMDSLKLTPIDGKEAGELKELSSEELEDVDIEKTSYEITIIEESLAKMKPNMAAIAEYRKKEEL YLQRVGELDKITDLRDNQRKYFEDLRKQRLDEFMAGFSVITNKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPK KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKARTRNAQFIIISLRNNMFELADRL VGIYKTDNCTKSVTINPSKLSLPLQDVDVNT |
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