Gene
| Gene Model ID | pfu_aug2.0_231.1_03841 |
|---|---|
| Locus | scaffold231.1 : 164052 ... 182065 : - |
| To GenomeBrowser | scaffold231.1:164052..182065 |
| Genes list of scaffold | scaffold231.1 |
| Synonym | pfu_aug1.0_110271.1_49651 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fragile x mental retardation syndrome-related protein 1 isoform x5 | GO:0003729 GO:0005737 GO:0009987 GO:0043229 GO:0044767 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_231.1_03841.t1 | 2 | 1 | KH_1 | 198 | 214 | 1.4e-09 | 37.4 | 0.12 | 450.0 | 0.5 |
| pfu_aug2.0_231.1_03841.t1 | 2 | 2 | KH_1 | 222 | 286 | 1.4e-09 | 37.4 | 2.3e-12 | 8.4e-09 | 34.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_231.1_03841.t1 | gi|325297110|ref|NP_001191563.1| | fragile X mental retardation protein [Aplysia californica] | 0.0 |
| pfu_aug2.0_231.1_03841.t1 | gi|585689152|ref|XP_006820813.1| | PREDICTED: fragile X mental retardation syndrome-related protein 1 homolog B-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_231.1_03841.t1 | gi|731490828|ref|XP_010591095.1| | PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform X6 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_231.1_03841.t1 | gi|664699394|ref|XP_008517934.1| | PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform X6 [Equus przewalskii] | 0.0 |
| pfu_aug2.0_231.1_03841.t1 | gi|664699392|ref|XP_008517863.1| | PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform X5 [Equus przewalskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_231.1_03841.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03841.t1 atggcctttctgaagaatgtttacgatgatgaagtgactgtttactttgagaatgattggcaacctgagcagagagtcag atttaacaatgtcagacttccacccaaagatcaggcacatagacctgacttccatgagggagagaatgttgaggtatata ccaaagccgcagaggacgaatattccggctggtggcctgccaagctgaaaatgctgaaaggagaatttgccgttattgaa tattccggctacgagtcatcatacacagatatagtacctctagacagagtgaggtctgctaactcgagtactcctgtgtc aaagaattccttccagaaattggtgatagatgtgcctctggatttaaaagaagcatgtcaagaagagaatgctcatacag agtttaagaagcactgtggtgcattagctgtatcatataatagcagcgattccacgcttattattctgtccacctccgac cctgtgataaaaagggcgtccatgttagctgatatgcatttacgaaatgtacggcagaaattattattaaaacaaagaac agaggaagctgctaaaaaattacaggtacatgacaggttccatgtgcatggtgagtcacaagaagccgttaagaaagcca ggattatattagagtacgttgaagaaacatttcaagtacccagagatttagttgctaaagttataggaaagaatggacgt aatatacaggacattgtagacaaatcaggggttgtgagggttaaaattgaaggggataatgagacagatgcacccagaga acagggacaagtgccttttatatttgttggtactctggaaagcacgggaaatgcaaaaatattattggagtatcatttag atcacttgaaggaagttgaaaagttacgattagagaaactagagattgaccaacaactccgcagtatttctgggtcacag caaggtccatatttccctccacctcgagaaagaagggggagtaatgatccatattcagatgaccgagggagaccaggaag ggggcgtggtcgagggggcaggcgatgggccaatgaacgtaggaattttggtacaggtgatgagtcttcacccgccccag ttggagattggtcagaggaagttctggcagaggaaagtgcacactcgggttacttcacagacagtgtcctgacaggacgt ggcagagggggttaccgaccccgagggagagggggattcaggagcaggggatcaggttactcatctaacaggtcatcaga taattataacggttacccacgatacaacagaaatatggatggagcgggctataattattcatcatataaatatagtgctt atgattcatacgatcaccgtgactcccgggattaccgtgatactcatactcgcagacggatgcacgacgaggaggataca gtattagacaacgctagtgtcaccagccaagatcaagattatgaaaggcgaccagaaaggaggcggaggaagcctaaaag gaatcgtttccgtggtaacggaagtgcggcatcaggaacagaaacagacaatagtgtatcaaattacagagggagaagtg ggttctcgtctcaaggtgaaagtgataggtcttcatatcagaaaaatgacaagcctataaaaactgaagatagcaggaag tccccctcccctactcaatctggtgctgccaaatctgtaaccaatcaatcatccaacaaagcaatgtcttcaaatcggca agattcggctccaccaaaggagagaagagaacctagagatcaacgtcggtcagagcagcgtggtcagaatgtgccgtcag tggcaagaaatggcacgccacaaagtggcagcgaatcagagccgaggacggcaaaaaataagactggaagcaataataaa ccaaagacggagcagatggttaacggagagtag |
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Protein
| Protein ID | pfu_aug2.0_231.1_03841.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03841.t1 MAFLKNVYDDEVTVYFENDWQPEQRVRFNNVRLPPKDQAHRPDFHEGENVEVYTKAAEDEYSGWWPAKLKMLKGEFAVIE YSGYESSYTDIVPLDRVRSANSSTPVSKNSFQKLVIDVPLDLKEACQEENAHTEFKKHCGALAVSYNSSDSTLIILSTSD PVIKRASMLADMHLRNVRQKLLLKQRTEEAAKKLQVHDRFHVHGESQEAVKKARIILEYVEETFQVPRDLVAKVIGKNGR NIQDIVDKSGVVRVKIEGDNETDAPREQGQVPFIFVGTLESTGNAKILLEYHLDHLKEVEKLRLEKLEIDQQLRSISGSQ QGPYFPPPRERRGSNDPYSDDRGRPGRGRGRGGRRWANERRNFGTGDESSPAPVGDWSEEVLAEESAHSGYFTDSVLTGR GRGGYRPRGRGGFRSRGSGYSSNRSSDNYNGYPRYNRNMDGAGYNYSSYKYSAYDSYDHRDSRDYRDTHTRRRMHDEEDT VLDNASVTSQDQDYERRPERRRRKPKRNRFRGNGSAASGTETDNSVSNYRGRSGFSSQGESDRSSYQKNDKPIKTEDSRK SPSPTQSGAAKSVTNQSSNKAMSSNRQDSAPPKERREPRDQRRSEQRGQNVPSVARNGTPQSGSESEPRTAKNKTGSNNK PKTEQMVNGE |
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