Gene
| Gene Model ID | pfu_aug2.0_231.1_03846 |
|---|---|
| Locus | scaffold231.1 : 256736 ... 259794 : + |
| To GenomeBrowser | scaffold231.1:256736..259794 |
| Genes list of scaffold | scaffold231.1 |
| Synonym | pfu_aug1.0_254113.1_64897 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_231.1_03846.t1 | 6 | 1 | zf-H2C2_2 | 5 | 18 | 2.6e-31 | 106.3 | 8.6e-05 | 0.064 | 13.5 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 1 | zf-C2H2 | 8 | 30 | 2.6e-24 | 84.0 | 4.8e-05 | 0.036 | 14.4 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 1 | zf-C2H2_4 | 8 | 30 | 1.7e-23 | 81.1 | 0.0019 | 1.4 | 9.3 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 1 | zf-C2H2_jaz | 8 | 27 | 6.8e-12 | 45.1 | 0.0017 | 1.3 | 9.3 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 1 | zf-met | 8 | 30 | 1.1e-11 | 44.5 | 0.00058 | 0.43 | 10.8 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 2 | zf-H2C2_2 | 24 | 46 | 2.6e-31 | 106.3 | 9.3e-10 | 6.9e-07 | 29.2 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 2 | zf-C2H2 | 36 | 58 | 2.6e-24 | 84.0 | 2.9e-07 | 0.00021 | 21.4 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 2 | zf-C2H2_4 | 36 | 59 | 1.7e-23 | 81.1 | 2.0e-06 | 0.0015 | 18.7 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 2 | zf-C2H2_jaz | 36 | 56 | 6.8e-12 | 45.1 | 0.00026 | 0.19 | 11.8 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 2 | zf-met | 36 | 55 | 1.1e-11 | 44.5 | 0.00095 | 0.71 | 10.1 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 3 | zf-H2C2_2 | 50 | 73 | 2.6e-31 | 106.3 | 2.4e-07 | 0.00018 | 21.6 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 3 | zf-C2H2 | 65 | 87 | 2.6e-24 | 84.0 | 0.0018 | 1.3 | 9.4 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 3 | zf-C2H2_4 | 65 | 87 | 1.7e-23 | 81.1 | 1.6e-05 | 0.012 | 15.9 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 3 | zf-met | 65 | 73 | 1.1e-11 | 44.5 | 0.22 | 160.0 | 2.6 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 3 | zf-C2H2_jaz | 66 | 73 | 6.8e-12 | 45.1 | 0.95 | 710.0 | 0.5 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 4 | zf-H2C2_2 | 79 | 103 | 2.6e-31 | 106.3 | 3.8e-07 | 0.00028 | 20.9 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 4 | zf-C2H2 | 93 | 115 | 2.6e-24 | 84.0 | 1.3e-05 | 0.0093 | 16.2 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 4 | zf-C2H2_4 | 93 | 115 | 1.7e-23 | 81.1 | 1.6e-05 | 0.012 | 15.9 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 4 | zf-C2H2_jaz | 93 | 115 | 6.8e-12 | 45.1 | 0.013 | 9.8 | 6.4 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 4 | zf-met | 93 | 112 | 1.1e-11 | 44.5 | 0.00067 | 0.5 | 10.6 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 5 | zf-H2C2_2 | 109 | 131 | 2.6e-31 | 106.3 | 1.1e-06 | 0.00081 | 19.5 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 5 | zf-C2H2 | 121 | 143 | 2.6e-24 | 84.0 | 2.5e-06 | 0.0018 | 18.4 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 5 | zf-C2H2_4 | 121 | 143 | 1.7e-23 | 81.1 | 9.3e-07 | 0.00069 | 19.7 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 5 | zf-C2H2_jaz | 121 | 140 | 6.8e-12 | 45.1 | 0.0007 | 0.52 | 10.5 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 5 | zf-met | 121 | 141 | 1.1e-11 | 44.5 | 6.4e-05 | 0.048 | 13.8 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 6 | zf-H2C2_2 | 135 | 159 | 2.6e-31 | 106.3 | 1.7e-08 | 1.3e-05 | 25.2 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 6 | zf-C2H2_jaz | 148 | 168 | 6.8e-12 | 45.1 | 1.8e-06 | 0.0013 | 18.7 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 6 | zf-C2H2 | 149 | 171 | 2.6e-24 | 84.0 | 2.6e-07 | 0.0002 | 21.5 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 6 | zf-C2H2_4 | 149 | 171 | 1.7e-23 | 81.1 | 3.9e-06 | 0.0029 | 17.8 |
| pfu_aug2.0_231.1_03846.t1 | 6 | 6 | zf-met | 149 | 168 | 1.1e-11 | 44.5 | 0.0055 | 4.1 | 7.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_231.1_03846.t1 | gi|641732473|ref|XP_008156599.1| | PREDICTED: zinc finger protein 235-like [Eptesicus fuscus] | 1.99965e-42 |
| pfu_aug2.0_231.1_03846.t1 | gi|586482071|ref|XP_006871553.1| | PREDICTED: zinc finger protein 235-like [Chrysochloris asiatica] | 3.00018e-42 |
| pfu_aug2.0_231.1_03846.t1 | gi|724868758|ref|XP_010370769.1| | PREDICTED: zinc finger protein 225 [Rhinopithecus roxellana] | 3.00018e-42 |
| pfu_aug2.0_231.1_03846.t1 | gi|478532066|ref|XP_004440183.1| | PREDICTED: zinc finger protein 235 isoform 1 [Ceratotherium simum simum] | 3.00018e-42 |
| pfu_aug2.0_231.1_03846.t1 | gi|478532068|ref|XP_004440184.1| | PREDICTED: zinc finger protein 235 isoform 2 [Ceratotherium simum simum] | 3.99931e-42 |
Transcript
| Transcript ID | pfu_aug2.0_231.1_03846.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03846.t1 atgagtgaagaagagaggccatataagtgtgaggtgtgtggaaagggtttctacttaatagctgcaatgaaaacacatgt aagaattcacagaggtgagagaccgtttaaatgtgatatttgtgattttgcttttgcggatgctcgaaatctgcgcacgc accaaaaaatccacaacaaggagaaggaccagcagtgtgagctctgtggtgccaggtttttatgggccagttgtctagca cgacatgttcagatcgtgcatgaaaaagtcaaatcatttgcctgcagtatctgcgggaaaaagtttggtcagaaaggtgc gatgaaaattcacgagactactcatagcactgagagaccgtttaaatgtgaggagtgtgggaaagacttcacatgtaaaa cagccctgaagtctcaccagagagttcatagtgtgatcaaaaggtttgtgtgccagtactgtgataagggctttaaccgg ggattccagcttaaacgacatctattacgatgtggaaaatcaaatgacaatttgagtactttggtagaattttcacaaga tatcgactccaaagaggatgatatggaagagaatatggtccatttggaaggacttgattccagtgtgctagatttgagca catctactgataccgtcatgcagtttgagcagtttacagaaaatgtaggtgttgttaatcatgaggtacactga |
|
Protein
| Protein ID | pfu_aug2.0_231.1_03846.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_231.1_03846.t1 MSEEERPYKCEVCGKGFYLIAAMKTHVRIHRGERPFKCDICDFAFADARNLRTHQKIHNKEKDQQCELCGARFLWASCLA RHVQIVHEKVKSFACSICGKKFGQKGAMKIHETTHSTERPFKCEECGKDFTCKTALKSHQRVHSVIKRFVCQYCDKGFNR GFQLKRHLLRCGKSNDNLSTLVEFSQDIDSKEDDMEENMVHLEGLDSSVLDLSTSTDTVMQFEQFTENVGVVNHEVH |
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