Gene
| Gene Model ID | pfu_aug2.0_233.1_10474 |
|---|---|
| Locus | scaffold233.1 : 44601 ... 71645 : - |
| To GenomeBrowser | scaffold233.1:44601..71645 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | pfu_aug1.0_1152.1_15375 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna damage-binding protein 1 | GO:0003684 GO:0005615 GO:0005654 GO:0005737 GO:0006289 GO:0016055 GO:0031464 GO:0031465 GO:0035518 GO:0042787 GO:0043066 GO:0043161 GO:0045070 GO:0046726 GO:0051702 GO:0070062 GO:0070914 GO:1901990 GO:1902188 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10474.t1 | 1 | 1 | MMS1_N | 75 | 544 | 0.0 | 289.1 | 0.0 | 0.0 | 288.5 |
| pfu_aug2.0_233.1_10474.t1 | 2 | 1 | CPSF_A | 258 | 317 | 0.0 | 289.2 | 0.062 | 460.0 | -0.4 |
| pfu_aug2.0_233.1_10474.t1 | 2 | 2 | CPSF_A | 790 | 1099 | 0.0 | 289.2 | 0.0 | 0.0 | 286.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10474.t1 | gi|676448658|ref|XP_009051803.1| | hypothetical protein LOTGIDRAFT_209160 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_233.1_10474.t1 | gi|260790329|ref|XP_002590195.1| | hypothetical protein BRAFLDRAFT_128289 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_233.1_10474.t1 | gi|632940946|ref|XP_007885605.1| | PREDICTED: DNA damage-binding protein 1 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_233.1_10474.t1 | gi|45383688|ref|NP_989547.1| | DNA damage-binding protein 1 [Gallus gallus] | 0.0 |
| pfu_aug2.0_233.1_10474.t1 | gi|733887617|ref|XP_010709065.1| | PREDICTED: DNA damage-binding protein 1 [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10474.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10474.t1 atggcgtacaattatgtagtgacagcacacaaggctaccgcagtgaatgcatgtgtaactggaaatttcacatctcaaaa tgacttgaatttgataattgctaaaaacacccgtctagagatatatgttgtgacacctgaagggctcaggccagtcaaag aggtgggaatttatggacgtattgcagtcatggagctctttagaccaccaggtgagagcaaagacctgatgtttctacta acagctcgttacaatgccatgatcctagagtgtaaccaggagggagaaaacattgatatcatcactagagcacatggaaa tgttcaggatagaataggtcgaccatcggagactggtatcataggaattgtggacccgctttgtcgagtaattggactaa ggctttatgatggactgttcaaagttatcccccttgacagagataataaagaacttaaagcatttaatataagattagaa gagctcacagtgatagacatgcagtttctacatggatgtaccacaccaacccttgtgttagtccaccaagatcagcacgg cagacacgttaagacgtacgagatctccttacgtgataaagagttccaaaaaggaccgtggaaacaagataatgtagaaa cagaagccagcatggttatagcagtgcctgagccattttgcggagctttgataattggtcaagaatctataacttaccat aaaggtgacagttttatacctatagccccagctgccatcaagcaaagtactctgacatgttttggtcgtgttgacgccaa tggttcacggtacttattaggggatatgatgggcagattgtttatgttgctactagagaaggaagagaaaatggactcca cagtagtggttaaagatctgaaagtagaactccttggagagaccaccatagctgagtgtataacatatctggataatggt gtagtgtatataggttctagactgggtgattcacagcttgtaaagttaacagtggaagcagatgaaaatggttcctatgt tcatgaaatggagaggtttacgaatctcggtcctgtccttgatatgtgtgtggttgaccttgaaagacaaggtcaaggtc agcttgtcacatgttcaggtgcatataaagaaggttcattaagagtcatcaggaatggtataggtatacatgaacatgcc agcatagatctacctggaatcaaaggtatctggtcactgagagtaaattcagaggaatacgacaacatcattgttctgtc ttttgtgggacaatcaagagtattgatgttgaatggtgaggaggttgaggagacggagttagctgggtttgagtcagatc aacaaactttcctctgtgctaatgtcgtccacaatcagctcatacagattacgcccctgtctgtacgattaatcagctgt gagacacagagactagtgagtgaatggcggcatcccgggggtaagaacatcagtttggctagctgtaatacgtgtcaagt tatcacagctgtgggaagtgaactttattacctggagttagctcctggatgcattaatcaagttggtacatgtaccatgg aacatgaagtggcgtgtgttgacttgacccccctgagggagggacaggaaagggcggatatgtgctgtcttggattatgg accgatatttctgcacgagtgctccggctacctacatttgaaagtttgcatgtggaaatgctagggggagagatcattcc ccgctccattttgatgactacatttgaaggtatccagtatttattggtagctctaggagacggagccctgttctatttta atcttaatgttgatacaggatatttctgtgagaagaggaaagtgacattaggtacacagccgactgtgttaaagacattt agatcattatcaaccactaacgtgtttgcttgttctgatcgccccactgtgatatactccagcaatcataagctggtctt ctctaacgttaatctgaaagaagtcaatcatatgtgtccacttaactctgagggatatccagatagtttggccttagcca atgacagtacattaactatcggtacaattgatgaaatacagaagcttcacatacgaacaatcaatctgggagagtcaccg aggcggatagcgtaccaggaggcttcacagacgtttggtgttatctctatgaggatggatctacaggatagtaacagtag taatccgacacgccccagtgcctccactcacgctgccatgacaacgtcaagctccagcggtaaaatggttaccacgggaa caagtaccatgggagagcatacatttggagatgaagttgatgttcattccctccttatcatagatcaacatacatttgaa gttttacatgcccatacgttaatgccaaacgagtttgccaccagtctgatctcgtctaagcttggcgaggactctcacac atactatatagtgggtactgcccttgtacatccagaggaagcagaacctaagcagggacggatacttgtcttccagtttc aagatggaaagcttaaccaagtagcagagaaagacatcaaaggtgcagcttatacattgttggatttcaatggaaaactg ctagccagtattaatagtacagtaagactgtttgaatggacagcagaaaaggagttacgactggaatgtagttacttcaa caacattgtggccttgtacatgaaatctaagggagactttatattggttggagatctgatgaggtccattacattattac tgtataaacccatggagggtacttttgaagagattgccagagactttaatccaaattggatgacagcagtggagatacta gatgatgagaactttctaggagcggagaattcttttaatttattcacgtgtcagaaagacagtgcatcaacgacagatga agacagacagaacttacaggaggtgggcatgttccaccttggagaattcgtcaatgttttcagacatgggtctttggtga tgcagcatgctggtgagaacagtacacctacccaaggttctgttttgtatggtacagttaatggtgcagtgggtcttgtt acacagataccacaggatttttataacttcttactggaggtacaaaatagactggctaaagtcatcaaaagtgtgggcaa agtagaacactcattctggaggtcattccacacggagagaaaaactgaaccgtgtgaaggttttatagacggagacttga tcgagagctatctggatctcaacagggacaaaatggcagaaacagtacaaggcctgcagatggatgatgggagtggaatg aagagggaggcaactgtggatgatttggtcaaaatgattgaagagctcacaaggattcattag |
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Protein
| Protein ID | pfu_aug2.0_233.1_10474.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10474.t1 MAYNYVVTAHKATAVNACVTGNFTSQNDLNLIIAKNTRLEIYVVTPEGLRPVKEVGIYGRIAVMELFRPPGESKDLMFLL TARYNAMILECNQEGENIDIITRAHGNVQDRIGRPSETGIIGIVDPLCRVIGLRLYDGLFKVIPLDRDNKELKAFNIRLE ELTVIDMQFLHGCTTPTLVLVHQDQHGRHVKTYEISLRDKEFQKGPWKQDNVETEASMVIAVPEPFCGALIIGQESITYH KGDSFIPIAPAAIKQSTLTCFGRVDANGSRYLLGDMMGRLFMLLLEKEEKMDSTVVVKDLKVELLGETTIAECITYLDNG VVYIGSRLGDSQLVKLTVEADENGSYVHEMERFTNLGPVLDMCVVDLERQGQGQLVTCSGAYKEGSLRVIRNGIGIHEHA SIDLPGIKGIWSLRVNSEEYDNIIVLSFVGQSRVLMLNGEEVEETELAGFESDQQTFLCANVVHNQLIQITPLSVRLISC ETQRLVSEWRHPGGKNISLASCNTCQVITAVGSELYYLELAPGCINQVGTCTMEHEVACVDLTPLREGQERADMCCLGLW TDISARVLRLPTFESLHVEMLGGEIIPRSILMTTFEGIQYLLVALGDGALFYFNLNVDTGYFCEKRKVTLGTQPTVLKTF RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCPLNSEGYPDSLALANDSTLTIGTIDEIQKLHIRTINLGESP RRIAYQEASQTFGVISMRMDLQDSNSSNPTRPSASTHAAMTTSSSSGKMVTTGTSTMGEHTFGDEVDVHSLLIIDQHTFE VLHAHTLMPNEFATSLISSKLGEDSHTYYIVGTALVHPEEAEPKQGRILVFQFQDGKLNQVAEKDIKGAAYTLLDFNGKL LASINSTVRLFEWTAEKELRLECSYFNNIVALYMKSKGDFILVGDLMRSITLLLYKPMEGTFEEIARDFNPNWMTAVEIL DDENFLGAENSFNLFTCQKDSASTTDEDRQNLQEVGMFHLGEFVNVFRHGSLVMQHAGENSTPTQGSVLYGTVNGAVGLV TQIPQDFYNFLLEVQNRLAKVIKSVGKVEHSFWRSFHTERKTEPCEGFIDGDLIESYLDLNRDKMAETVQGLQMDDGSGM KREATVDDLVKMIEELTRIH |
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