Gene
| Gene Model ID | pfu_aug2.0_233.1_10481 |
|---|---|
| Locus | scaffold233.1 : 237954 ... 253902 : - |
| To GenomeBrowser | scaffold233.1:237954..253902 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | pfu_aug1.0_9032.1_38851 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ddb1- and cul4-associated factor 7 | GO:0005634 GO:0051216 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10481.t1 | 7 | 1 | WD40 | 64 | 91 | 8.2e-19 | 66.7 | 0.014 | 53.0 | 3.9 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 2 | WD40 | 122 | 146 | 8.2e-19 | 66.7 | 0.0031 | 11.0 | 6.0 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 3 | WD40 | 164 | 205 | 8.2e-19 | 66.7 | 0.00017 | 0.62 | 10.0 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 4 | WD40 | 236 | 260 | 8.2e-19 | 66.7 | 0.0031 | 11.0 | 6.0 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 5 | WD40 | 278 | 317 | 8.2e-19 | 66.7 | 1.7e-08 | 6.1e-05 | 22.7 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 6 | WD40 | 369 | 407 | 8.2e-19 | 66.7 | 3.3e-09 | 1.2e-05 | 24.9 |
| pfu_aug2.0_233.1_10481.t1 | 7 | 7 | WD40 | 426 | 436 | 8.2e-19 | 66.7 | 1.5 | 5500.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10481.t1 | gi|291245046|ref|XP_002742402.1| | PREDICTED: DDB1- and CUL4-associated factor 7-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_233.1_10481.t1 | gi|45360843|ref|NP_989097.1| | DDB1- and CUL4-associated factor 7 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_233.1_10481.t1 | gi|147902045|ref|NP_001086790.1| | MGC82392 protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_233.1_10481.t1 | gi|632987275|ref|XP_007910702.1| | PREDICTED: DDB1- and CUL4-associated factor 7 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_233.1_10481.t1 | gi|698401249|ref|XP_009808856.1| | PREDICTED: DDB1- and CUL4-associated factor 7 [Gavia stellata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10481.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10481.t1 atgagtgcccttcagccccaacctccggccaaacggaaggaaatctataaatatgaggcaccatggacagtgtatagtat gaactggagcatcagacctgacaaacgattcagactggctcttggaagctttgttcaaattgtttcccttgatgaggaga cttcagattttacatcaaagagtacatttgatcatccatatcctaccacaaaaataatgtggattccggacacgaaaggt gtgtttcctgatttgttggccaccagtggtgattacctccgtgtatggagagttggtgacgtagacaccaaactggaatg tctactcaacaataataagaattctgatttttgtgctccgctgacttcgtttgattggaatgaggtcgatcctaatttat taggaacttccagtatagatacaacgtgtacaatatggggtttggagacaggacaggtgcttggtcgggtgaatgtagta tctgggcatgtaaagacccagctgatcgcccatgataaggaggtgtatgacattgccttcagcagggcaggagggggcag ggatatgtttgccagtgttggtgtgtttcctgatttgttagctaccagtggtgattacctccgtgtatggagagttggtg acgtagacaccaaactggaatgtctactcaacaataataagaattctgatttttgtgctccactgacttcatttgattgg aatgaggtcgatcctaatttattaggtacttccagtatagatacaacatgtacaatatggggtttggagacaggacaggt gcttggtcgggtgaatgtagtatctgggcatgtaaagacccagctgatcgcccacgataaggaggtgtatgacatcgcct tcagtagggcaggagggggcagggatatgtttgccagtgttggtgctgatggatcagtgcggatgtttgacctgcgacat ttagagcattctaccataatatacgaggacccccagcatcatccgttattacgactgggctggaacaaacaggatcctaa ttacctggcaacgatggccatggacgccatggaagttataattcttgatgtacgagttccatgtacccccgtagctagac taaataaccacagagcttgtgttaatggcattgcatgggcaccacactcaagctgccatatatgtaccgcagctgatgat catcaagcccttatctgggacatacagtcaatgccccgtgctatagaagaccccattctggcctatacggcagcagggga gataaaccaaatacagtggtcatcgactcagccagactggatatcaatatgttataataactatgatactgtagatgata ctgatgatactgtagatgatactgatgatactgtagatgatactgatgatactgtagatgatattgatgatactgtagat gatactgatgatactgtagatgatactgatgatactgtagatgatactgacgatactgcagatgatactgacgatactgt agatgatactatagatgatgctgtagatgatattgatgatgctgtagatgatactgatgatactgtagatgatactttaa ttattttgaccttttgcttgagtgctagaatgttttga |
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Protein
| Protein ID | pfu_aug2.0_233.1_10481.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10481.t1 MSALQPQPPAKRKEIYKYEAPWTVYSMNWSIRPDKRFRLALGSFVQIVSLDEETSDFTSKSTFDHPYPTTKIMWIPDTKG VFPDLLATSGDYLRVWRVGDVDTKLECLLNNNKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNVV SGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGVFPDLLATSGDYLRVWRVGDVDTKLECLLNNNKNSDFCAPLTSFDW NEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNVVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRH LEHSTIIYEDPQHHPLLRLGWNKQDPNYLATMAMDAMEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADD HQALIWDIQSMPRAIEDPILAYTAAGEINQIQWSSTQPDWISICYNNYDTVDDTDDTVDDTDDTVDDTDDTVDDIDDTVD DTDDTVDDTDDTVDDTDDTADDTDDTVDDTIDDAVDDIDDAVDDTDDTVDDTLIILTFCLSARMF |
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