Gene
| Gene Model ID | pfu_aug2.0_2334.1_15489 |
|---|---|
| Locus | scaffold2334.1 : 91117 ... 101215 : - |
| To GenomeBrowser | scaffold2334.1:91117..101215 |
| Genes list of scaffold | scaffold2334.1 |
| Synonym | pfu_aug1.0_6636.1_67493 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2334.1_15489.t1 | 1 | 1 | MRP-S24 | 28 | 160 | 1.4013e-45 | 154.5 | 0.0 | 1.4013e-45 | 154.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2334.1_15489.t1 | gi|524871672|ref|XP_005092607.1| | PREDICTED: 28S ribosomal protein S24, mitochondrial-like [Aplysia californica] | 7.0e-36 |
| pfu_aug2.0_2334.1_15489.t1 | gi|194746456|ref|XP_001955696.1| | GF18891 [Drosophila ananassae] | 3.0e-33 |
| pfu_aug2.0_2334.1_15489.t1 | gi|195108463|ref|XP_001998812.1| | GI23426 [Drosophila mojavensis] | 4.0e-33 |
| pfu_aug2.0_2334.1_15489.t1 | gi|195144892|ref|XP_002013430.1| | GL24137 [Drosophila persimilis] | 6.0e-33 |
| pfu_aug2.0_2334.1_15489.t1 | gi|198452528|ref|XP_001358819.2| | GA12401 [Drosophila pseudoobscura pseudoobscura] | 7.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_2334.1_15489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2334.1_15489.t1 atgagcaatttgtgcttcatagagcatttacagaaattgaatacaagatggataaaaacttcttctgtactatgcaaaaa tctcagggctggaaaggtcaaagctaacaaaatgagaaaacaaagactgacatatgaaaaagccaatactccacctacaa taggagtccgaaagtcatggttatcttggaatacaagcaacctgaaggatgaggaaaagtcatcacagagagcatttgaa gatctgatcatcagaaaattcatcactgggacctgggttggtagacttgaggtcatctcagaggttattatcaaaagaag atataactgtgtttacatagcttttatagtgaatgaaagcagagaacttttaaatgcaaattactttcttaaaggatact ctgaggaaatgctatccataatattgaagtgccctgtgaaatgtgagataattagagcaacaaatgatgaccttgtttac ggcattatatga |
|
Protein
| Protein ID | pfu_aug2.0_2334.1_15489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2334.1_15489.t1 MSNLCFIEHLQKLNTRWIKTSSVLCKNLRAGKVKANKMRKQRLTYEKANTPPTIGVRKSWLSWNTSNLKDEEKSSQRAFE DLIIRKFITGTWVGRLEVISEVIIKRRYNCVYIAFIVNESRELLNANYFLKGYSEEMLSIILKCPVKCEIIRATNDDLVY GII |
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