Gene
| Gene Model ID | pfu_aug2.0_2335.1_18773 |
|---|---|
| Locus | scaffold2335.1 : 6216 ... 7557 : + |
| To GenomeBrowser | scaffold2335.1:6216..7557 |
| Genes list of scaffold | scaffold2335.1 |
| Synonym | pfu_aug1.0_1264.1_58416 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2335.1_18773.t1 | 1 | 1 | RVT_1 | 125 | 339 | 1.3e-30 | 106.3 | 2.7e-34 | 2.0e-30 | 105.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2335.1_18773.t1 | gi|557014929|ref|XP_006007954.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2335.1_18773.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2335.1_18773.t1 atgtccaattgcaactcacatatcaaagacaaacttggtaacatcttgaatacggagaaggaacaaacagagcgatggag agaacacttttgtgaagtgttaaatagagaggaaccagaggtcacgatgaatatagatgctgatgaacaacaggagctgg atattgacatctcagatattacaagggaagaggtcaggagagcaataaggaagctgaagaacaacaaagcagcaggatct gataacatccaggcggaaatgatgaaagagagtgaaaacactagtgttgaggtgttacacatcctgttcaacagcatctg gaaggaagaaaaggtactggaaaaatggaaggaaggaatcattgttaaacttcctaaaaagggtgacttgacccagtgca acaactggagagggattacattactatctgtcccaggaaaagttatgtgccgtgtattacttgagagaattaagggtgag gtagataacatcttgaggaaggagcaaagtgggttcagaagaaacaggtcatgtacagacaacatcttttgcttacgtaa catcattgagcagagtttggagtggagagcatcgctgtacataaacttcatagactttgagaaagcgtttgacagtatac atcgggtcacactatggaagatcatggaggtttatggaataccaagaaagattataggtatcatcaaggacatgtatgag ggatttagatgcacagtgagacatgacggatcaacatctgattggttcatgataacatctggagtaagacaagggtgcat aatgtcaccctttatgtttcttctttgcattgactggttaatgaagcgtgtgacagaatcagagcctcgtggaattcatt ggacttttacaacttgtctggaggacatagattttgcagacgacattagtctccttagccacacacatatgcaggaaaaa accatcaagttgaaagaagagggaggaaagattggattgaaaattaacaatagaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_2335.1_18773.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2335.1_18773.t1 MSNCNSHIKDKLGNILNTEKEQTERWREHFCEVLNREEPEVTMNIDADEQQELDIDISDITREEVRRAIRKLKNNKAAGS DNIQAEMMKESENTSVEVLHILFNSIWKEEKVLEKWKEGIIVKLPKKGDLTQCNNWRGITLLSVPGKVMCRVLLERIKGE VDNILRKEQSGFRRNRSCTDNIFCLRNIIEQSLEWRASLYINFIDFEKAFDSIHRVTLWKIMEVYGIPRKIIGIIKDMYE GFRCTVRHDGSTSDWFMITSGVRQGCIMSPFMFLLCIDWLMKRVTESEPRGIHWTFTTCLEDIDFADDISLLSHTHMQEK TIKLKEEGGKIGLKINNRK |
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