Gene
| Gene Model ID | pfu_aug2.0_234.1_13840 |
|---|---|
| Locus | scaffold234.1 : 86766 ... 92142 : + |
| To GenomeBrowser | scaffold234.1:86766..92142 |
| Genes list of scaffold | scaffold234.1 |
| Synonym | pfu_aug1.0_2972.1_15998 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription intermediary factor 1-beta-like | GO:0005488 GO:0005622 GO:0019219 GO:0044260 GO:0044767 GO:0060255 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_234.1_13840.t1 | 3 | 1 | zf-B_box | 16 | 58 | 5.4e-14 | 51.8 | 1.2e-09 | 5.7e-06 | 26.1 |
| pfu_aug2.0_234.1_13840.t1 | 3 | 2 | zf-B_box | 75 | 112 | 5.4e-14 | 51.8 | 7.6e-13 | 3.7e-09 | 36.3 |
| pfu_aug2.0_234.1_13840.t1 | 3 | 3 | zf-B_box | 481 | 487 | 5.4e-14 | 51.8 | 3.0 | 15000.0 | -4.4 |
Transcript
| Transcript ID | pfu_aug2.0_234.1_13840.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13840.t1 atgagtgacaaaggtgccacgtcgattcccccacagactttcgtggagtgtgacctatgtaaagggaacgtcaacatatc atggttttgtaaaaactgtccgacatcactttgtgacgcatgcgctactgcccacaagacaactcaacaatacaaatccc acaccgttgtaccacggacatacaccgtccttcgattatacggaccggcaaaattagcagaacaatgccacatccatcca gaaaaagaaatttcatcctattgcaacgattgcgatatcccatgctgtgtaacgtgtatggtgaacgatcacaaacgtca tgacttctccactatagaagataaatacctggatgccgagaaaagccttaacgagtactatagaaagcttgataccgacg tcagaccaacgcttgaaaagatggaggaacaagccaggactcatgttcaggaagatagcagccatgctgagaaagtgata aatgagatcaacgatttccgtaaagatgttgttcataattttaatagagcatgtgatgatctcattgttgaggtaaaaca gatgccattcaaaagcaccgaagttttgaaagaaattgaaaactcaatgaaaaaccttgaagcaataaaaaacgaaactg aagaaaaaattgcaaggggggatttagaaatcattacataccaacccccaaaattcgaaacaatcgtccctacatttgat aaaccaacactagttgtaccaattttcaaacctgctagcaaggttttagatgccataaaagaatcagtggggattattga aataaaagagattaatgaaaagcaaattgaaagtaacaaaagcataatttgtttagatattcaaaagatcagatcattta aatgtgagatagggggcacatccatgaccacgtcaggtaacaatatggcctgggttatgcatcataatagtcctaccatg tatctgtataacgatgagggtaaggtagtaaggtctgtgacagtgggaggtagaaggggcatcaatgacatgaccatcac acagtcaggggagatgatagttacatgtatagacaatagagtgaggcgtgtatcagttagtggtgaggtgtctacactga tagatactgcaccctttggttgctctggtgtttgtcttactgacaaagaggagattgtagtgtgtatgaatgatcagggt tatagtaaccacgtggctgtgtactcttctgatggacgtagtaagctacgtgagatacggggtagggacggtaaggggaa ataccttcttattaaaccctaccgtgtggtacagaattgtcaggatctgtgtgtggtgaatataaaaaacaatgtggtgt gtgtggatgagagtgataatgtgagatgggtgtatgatggtaagcaggctaagctgggggagccatttagtccacgttgt atatgtagagatcattatcagaacttgctggtcactgatatagaaaaccattgtgtacattatatacatagggagggagg actgatacgggtggtactgacacaggaacaaataggattacagtatcactgggggatctgtgtagatgatgttacaagac acgtatgggttggtgctggcttatttaagaagaatgtagtcattgcaaaatatcttgattga |
|
Protein
| Protein ID | pfu_aug2.0_234.1_13840.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13840.t1 MSDKGATSIPPQTFVECDLCKGNVNISWFCKNCPTSLCDACATAHKTTQQYKSHTVVPRTYTVLRLYGPAKLAEQCHIHP EKEISSYCNDCDIPCCVTCMVNDHKRHDFSTIEDKYLDAEKSLNEYYRKLDTDVRPTLEKMEEQARTHVQEDSSHAEKVI NEINDFRKDVVHNFNRACDDLIVEVKQMPFKSTEVLKEIENSMKNLEAIKNETEEKIARGDLEIITYQPPKFETIVPTFD KPTLVVPIFKPASKVLDAIKESVGIIEIKEINEKQIESNKSIICLDIQKIRSFKCEIGGTSMTTSGNNMAWVMHHNSPTM YLYNDEGKVVRSVTVGGRRGINDMTITQSGEMIVTCIDNRVRRVSVSGEVSTLIDTAPFGCSGVCLTDKEEIVVCMNDQG YSNHVAVYSSDGRSKLREIRGRDGKGKYLLIKPYRVVQNCQDLCVVNIKNNVVCVDESDNVRWVYDGKQAKLGEPFSPRC ICRDHYQNLLVTDIENHCVHYIHREGGLIRVVLTQEQIGLQYHWGICVDDVTRHVWVGAGLFKKNVVIAKYLD |
|