Gene
| Gene Model ID | pfu_aug2.0_234.1_13845 |
|---|---|
| Locus | scaffold234.1 : 240461 ... 242477 : - |
| To GenomeBrowser | scaffold234.1:240461..242477 |
| Genes list of scaffold | scaffold234.1 |
| Synonym | pfu_aug1.0_93226.1_06190 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_234.1_13845.t1 | 1 | 1 | zf-RING_2 | 19 | 65 | 1.5e-06 | 27.9 | 1.5e-09 | 1.5e-06 | 27.9 |
| pfu_aug2.0_234.1_13845.t1 | 1 | 1 | zf-C3HC4 | 20 | 64 | 8.1e-09 | 35.0 | 8.2e-12 | 8.1e-09 | 35.0 |
| pfu_aug2.0_234.1_13845.t1 | 4 | 1 | zf-C3HC4_2 | 20 | 64 | 3.8e-07 | 30.0 | 3.9e-10 | 3.8e-07 | 30.0 |
| pfu_aug2.0_234.1_13845.t1 | 4 | 2 | zf-C3HC4_2 | 105 | 135 | 3.8e-07 | 30.0 | 1.6 | 1600.0 | -0.8 |
| pfu_aug2.0_234.1_13845.t1 | 4 | 3 | zf-C3HC4_2 | 167 | 193 | 3.8e-07 | 30.0 | 0.97 | 960.0 | -0.1 |
| pfu_aug2.0_234.1_13845.t1 | 4 | 4 | zf-C3HC4_2 | 572 | 581 | 3.8e-07 | 30.0 | 7.7 | 7600.0 | -3.0 |
Transcript
| Transcript ID | pfu_aug2.0_234.1_13845.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13845.t1 atggcgatggcagcctcaacagatatctctctctcggccaaggtggatcttaaaacttgttctatttgttttgagacttt taaaattcctaaatattttccgtgtttacatagcttttgtgagggatgtataaaaacgtacattacaacgactttcgaac agacaaagggcggtattcattgtccattgtgtcggttgttcgtgccaaaatcaaaggatgtcagcattggggaatggtcg acaaaactaccaacaaatcatatactagttagtttgattgatatggaagaatccaagtcagataagaaactatgtactgc ttgtgcaagggaaaacgaaaccgaaagtgcctgctcctggtgcgtaaactgcagtgaatcactctgtaaagtatgcgatc gttcacaccgtaggaacaaattcacatcaagtcatacgctggttgaacttgcgacatcagaaacatgtgaaatgcaactc catcatgccgatataccttgtacagaacatccggatgaaaaagttaaagcgtattgtaccgaccactccatgacttgttg catgacatgcgtaatgctcaaacacagaaagtgtgaaaatgtaggatccgtagaagacgcaagtgaccaaaagaaaaagt ctccagaagtacaagaatttacgaaagatttacaaaatcttaagaaatcgcttgacgaaatggtaaacgacagatctaaa aacttacaacatttcgacaaggaaattcaaaatataaaagatgaaatcgatagattatttacacgcatatcgagtcactt gaatcgtttgaagtcagatatgttatcggagatatcgcagattgaaaaaagggtccgaccagagatagtggataaacgtg atgaaatcaaatgtaaaatgtctacgatagagaatgacattgccttatttcaaaccaacatgaagtacgccccacccgcc cgattcctacaagcaattgaaaaactcatggaacaaaaactgatactcgaaaaatttgtgaaagaccaaaatcaagaaat tcaggatgtggagataacatttgaagcaaacaagaaagttttagaaatagaaaaagatattggtttattaggaaaaataa atctcagaagatctgaaaaagatgacttgccgcagtccacatatacatttatcgacatgagctcagccataccaactctt tcttcagtggtcgatatagaaacaactgagacaggaatagcaatattagatacaggtcatgtggtgctgtctgatttcga cgccaagaccttacagttacgtgaccaacattgtacgacaatactgtcatcattatcactgcaaggatcccttgggggaa tcaagatgaccagtgacacagaaggcgctgtagttgtatcaggacatggattggtcatcttcaacatacaaaacaatcag ataacgaagataaaacaaatcaggacaaacgtgaatcgtgactttgtgtatcacagagatagatattacatcggatacgg ccagattatcgctgtatatgacaatagtttccataagatccgtgatatatcagtgaacaatggtgtataccatatggctc tccgtgatgacaactcactgtgttatactggtggacgacaggtacattgtatcactatggacggtacccctgtgttcacg tactcacatgacagactggtaaagccacgaggtatcacagtttgtcaatccagacatatcttcgtctggtgcttttcttc taagaacgtacatcaactgacttacgatggaaagcttcagagaattatatttgacaacattccttcttatccgtattgca tcagctttaacactcggggtgacagagccgtcgttggatgtaactacaagacagctttgtatgatctgaaataa |
|
Protein
| Protein ID | pfu_aug2.0_234.1_13845.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13845.t1 MAMAASTDISLSAKVDLKTCSICFETFKIPKYFPCLHSFCEGCIKTYITTTFEQTKGGIHCPLCRLFVPKSKDVSIGEWS TKLPTNHILVSLIDMEESKSDKKLCTACARENETESACSWCVNCSESLCKVCDRSHRRNKFTSSHTLVELATSETCEMQL HHADIPCTEHPDEKVKAYCTDHSMTCCMTCVMLKHRKCENVGSVEDASDQKKKSPEVQEFTKDLQNLKKSLDEMVNDRSK NLQHFDKEIQNIKDEIDRLFTRISSHLNRLKSDMLSEISQIEKRVRPEIVDKRDEIKCKMSTIENDIALFQTNMKYAPPA RFLQAIEKLMEQKLILEKFVKDQNQEIQDVEITFEANKKVLEIEKDIGLLGKINLRRSEKDDLPQSTYTFIDMSSAIPTL SSVVDIETTETGIAILDTGHVVLSDFDAKTLQLRDQHCTTILSSLSLQGSLGGIKMTSDTEGAVVVSGHGLVIFNIQNNQ ITKIKQIRTNVNRDFVYHRDRYYIGYGQIIAVYDNSFHKIRDISVNNGVYHMALRDDNSLCYTGGRQVHCITMDGTPVFT YSHDRLVKPRGITVCQSRHIFVWCFSSKNVHQLTYDGKLQRIIFDNIPSYPYCISFNTRGDRAVVGCNYKTALYDLK |
|