Gene
| Gene Model ID | pfu_aug2.0_234.1_13850 |
|---|---|
| Locus | scaffold234.1 : 303680 ... 328857 : - |
| To GenomeBrowser | scaffold234.1:303680..328857 |
| Genes list of scaffold | scaffold234.1 |
| Synonym | pfu_aug1.0_6347.1_09333 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_234.1_13850.t3 | 2 | 1 | PBC | 37 | 171 | 0.0 | 353.0 | 0.0 | 0.0 | 203.9 |
| pfu_aug2.0_234.1_13850.t3 | 2 | 2 | PBC | 177 | 267 | 0.0 | 353.0 | 0.0 | 1.12104e-44 | 152.4 |
| pfu_aug2.0_234.1_13850.t3 | 3 | 1 | Homeobox_KN | 249 | 270 | 8.3e-19 | 67.0 | 1.3 | 1800.0 | -1.3 |
| pfu_aug2.0_234.1_13850.t3 | 2 | 1 | Homeobox | 269 | 328 | 2.7e-21 | 74.9 | 4.8e-22 | 6.5e-19 | 67.3 |
| pfu_aug2.0_234.1_13850.t3 | 3 | 2 | Homeobox_KN | 287 | 325 | 8.3e-19 | 67.0 | 2.4e-18 | 3.3e-15 | 55.5 |
| pfu_aug2.0_234.1_13850.t3 | 3 | 3 | Homeobox_KN | 361 | 372 | 8.3e-19 | 67.0 | 0.0011 | 1.5 | 8.6 |
| pfu_aug2.0_234.1_13850.t3 | 2 | 2 | Homeobox | 362 | 375 | 2.7e-21 | 74.9 | 0.00021 | 0.29 | 10.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_234.1_13850.t3 | gi|632982983|ref|XP_007908423.1| | PREDICTED: pre-B-cell leukemia transcription factor 2-like [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_234.1_13850.t3 | gi|759180641|ref|XP_011379205.1| | PREDICTED: pre-B-cell leukemia transcription factor 1 isoform X1 [Pteropus vampyrus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_234.1_13850.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13850.t1 atggacgacggacaaagactaatgcacccacaacagggaggtgtcaataatatgtcgggaaatatgttacagcagtacgg aatgggtcaaggggacgatacgtccgatcaaagaaaacaagagatcggggacattttacaacagattatgacaattaccg atcaaagtttggacgaagcccaagcaaggaaacacacgttaaactgtcatcgaatgaaaccagccttatttagtgtttta tgtgaaatcaaagaaaaaacggtgctaagtatacgaaattcacaagaggaggaacccccagacccacaattgatgcgatt ggataatatgttaatagccgaaggagtagcgggccctgaaaaaggaggtggctcctcagcggcggcaaacgctacggcgg cggcatcaggtggccagccggacagcgctatagaacactcagattaccgtgccaaactcgctcagatacgacaaatctac catacggagctggaaaaatacgaacaggacctaagtgacataagcgatggttcggaaatcaaaaactccgactacgaggc caaactagcccagatccgacaagtctaccaaacagagtatgggaaatatgagcaggcatgcaatgagtttacaactcacg tggttaatttactgagagaacaaagtcgcacgagacctatcgcaccaaaggaaattgaaagaatggtcggaattatacgt aagaagtttgctgccatagaaatgcagttgaaacaatcaacatgtgaagccgttatgattctaagatctcgcttcttgga tgccaggaggaagaggcgtaacttcagtaagcaggccacggagatcctgaacgagtatttctactctcatctgagtaatc cgtatccgagtgaagaagccaaggaagagctggccaggaagtgtggtattaccgtatctcagatttctaattggttcggt aacaaaagaattcgatacaagaagagtattggaaaagctcaagaggaggcatccgtcgccatggcgtccgccaatatggc gtctgtgcaaggtggacctggttacaatatgggagggtctgtaacaggacaaggaagtgggatgtacatgaacttaaacg gagataattatcaaggcagtgataactcggtgaataccctgcgacattccatatcccagccggggggatacaatagtgac agcatgcatagcacgggagtttacgaacagcatctaaatcaacaggcaacaccacatagtcgaggaagcatcaatgggtc gccacacgacatagatagaaaacccgaggatagtgaaggctggggtgccggtggcttcatgcacagtctggacggagaga gagatggctttgatggggatgaaccgggcctcaaagggccaaaactttag |
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| Transcript ID | pfu_aug2.0_234.1_13850.t2 |
| Definition | - |
>pfu_aug2.0_234.1_13850.t2 atggacgacggacaaagactaatgcacccacaacagggaggtgtcaataatatgtcgggaaatatgttacagcagtacgg aatgggtcaaggggacgatacgtccgatcaaagaaaacaagagatcggggacattttacaacagattatgacaattaccg atcaaagtttggacgaagcccaagcaaggaaacacacgttaaactgtcatcgaatgaaaccagccttatttagtgtttta tgtgaaatcaaagaaaaaacggtgctaagtatacgaaattcacaagaggaggaacccccagacccacaattgatgcgatt ggataatatgttaatagccgaaggagtagcgggccctgaaaaaggaggtggctcctcagcggcggcaaacgctacggcgg cggcatcaggtggccagccggacagcgctatagaacactcagattaccgtgccaaactcgctcagatacgacaaatctac catacggagctggaaaaatacgaacaggacctaagtgacataagcgatggttcggaaatcaaaaactccgactacgaggc caaactagcccagatccgacaagtctaccaaacagagtatgggaaatatgagcaggcatgcaatgagtttacaactcacg tggttaatttactgagagaacaaagtcgcacgagacctatcgcaccaaaggaaattgaaagaatggtcggaattatacgt aagaagtttgctgccatagaaatgcagttgaaacaatcaacatgtgaagccgttatgattctaagatctcgcttcttgga tgccaggaggaagaggcgtaacttcagtaagcaggccacggagatcctgaacgagtatttctactctcatctgagtaatc cgtatccgagtgaagaagccaaggaagagctggccaggaagtgtggtattaccgtatctcagatttctaattggttcgga aacaaaagaattcgatacaagaaaaacattggcaaggctcaagaggaggctaacatgtacgcagcaaaggctgcatcgac ggccatgaactctacccatgattcccaaggtggacctggttacaatatgggagggtctgtaacaggacaaggaagtggga tgtacatgaacttaaacggagataattatcaaggcagtgataactcggtgaataccctgcgacattccatatcccagccg gggggatacaatagtgacagcatgcatagcacgggagtttacgaacagcatctaaatcaacaggcaacaccacatagtcg aggaagcatcaatgggtcgccacacgacatagatagaaaacccgaggatagtgaaggctggggtgccggtggcttcatgc acagtctggacggagagagagatggctttgatggggatgaaccgggcctcaaagggccaaaactttag |
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| Transcript ID | pfu_aug2.0_234.1_13850.t3 |
| Definition | - |
>pfu_aug2.0_234.1_13850.t3 atggacgacggacaaagactaatgcacccacaacagggaggtgtcaataatatgtcgggaaatatgttacagcagtacgg aatgggtcaaggggacgatacgtccgatcaaagaaaacaagagatcggggacattttacaacagattatgacaattaccg atcaaagtttggacgaagcccaagcaaggaaacacacgttaaactgtcatcgaatgaaaccagccttatttagtgtttta tgtgaaatcaaagaaaaaacggtgctaagtatacgaaattcacaagaggaggaacccccagacccacaattgatgcgatt ggataatatgttaatagccgaaggagtagcgggccctgaaaaaggaggtggctcctcagcggcggcaaacgctacggcgg cggcatcaggtggccagccggacagcgctatagaacactcagattaccgtgccaaactcgctcagatacgacaaatctac catacggagctggaaaaatacgaacaggacctaagtgacataagcgatggttcggaaatcaaaaactccgactacgaggc caaactagcccagatccgacaagtctaccaaacagagtatgggaaatatgagcaggcatgcaatgagtttacaactcacg tggttaatttactgagagaacaaagtcgcacgagacctatcgcaccaaaggaaattgaaagaatggtcggaattatacgt aagaagtttgctgccatagaaatgcagttgaaacaatcaacatgtgaagccgttatgattctaagatctcgcttcttgga tgccaggaggaagaggcgtaacttcagtaagcaggccacggagatcctgaacgagtatttctactctcatctgagtaatc cgtatccgagtgaagaagccaaggaagagctggccaggaagtgtggtattaccgtatctcagatttctaattggttcgga aacaaaagaattcgatacaagaaaaacattggcaaggctcaagaggaggctaacatgtacgcagcaaaggctgcatcgac ggccatgaactctacccatgattcccaaggaagaggccaatatatttctaattggttcggtaacaaaagaattcgataca agaagagtattggaaaagctcaagaggaggcatccgtcgccatggcgtccgccaatatggcgtctgtgcaaggtggacct ggttacaatatgggagggtctgtaacaggacaaggaagtgggatgtacatgaacttaaacggagataattatcaaggcag tgataactcggtgaataccctgcgacattccatatcccagccggggggatacaatagtgacagcatgcatagcacgggag tttacgaacagcatctaaatcaacaggcaacaccacatagtcgaggaagcatcaatgggtcgccacacgacatagataga aaacccgaggatagtgaaggctggggtgccggtggcttcatgcacagtctggacggagagagagatggctttgatgggga tgaaccgggcctcaaagggccaaaactttag |
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Protein
| Protein ID | pfu_aug2.0_234.1_13850.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_234.1_13850.t1 MDDGQRLMHPQQGGVNNMSGNMLQQYGMGQGDDTSDQRKQEIGDILQQIMTITDQSLDEAQARKHTLNCHRMKPALFSVL CEIKEKTVLSIRNSQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGSSAAANATAAASGGQPDSAIEHSDYRAKLAQIRQIY HTELEKYEQDLSDISDGSEIKNSDYEAKLAQIRQVYQTEYGKYEQACNEFTTHVVNLLREQSRTRPIAPKEIERMVGIIR KKFAAIEMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQISNWFG NKRIRYKKSIGKAQEEASVAMASANMASVQGGPGYNMGGSVTGQGSGMYMNLNGDNYQGSDNSVNTLRHSISQPGGYNSD SMHSTGVYEQHLNQQATPHSRGSINGSPHDIDRKPEDSEGWGAGGFMHSLDGERDGFDGDEPGLKGPKL |
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| Protein ID | pfu_aug2.0_234.1_13850.t2 |
| Definition | - |
>pfu_aug2.0_234.1_13850.t2 MDDGQRLMHPQQGGVNNMSGNMLQQYGMGQGDDTSDQRKQEIGDILQQIMTITDQSLDEAQARKHTLNCHRMKPALFSVL CEIKEKTVLSIRNSQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGSSAAANATAAASGGQPDSAIEHSDYRAKLAQIRQIY HTELEKYEQDLSDISDGSEIKNSDYEAKLAQIRQVYQTEYGKYEQACNEFTTHVVNLLREQSRTRPIAPKEIERMVGIIR KKFAAIEMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQISNWFG NKRIRYKKNIGKAQEEANMYAAKAASTAMNSTHDSQGGPGYNMGGSVTGQGSGMYMNLNGDNYQGSDNSVNTLRHSISQP GGYNSDSMHSTGVYEQHLNQQATPHSRGSINGSPHDIDRKPEDSEGWGAGGFMHSLDGERDGFDGDEPGLKGPKL |
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| Protein ID | pfu_aug2.0_234.1_13850.t3 |
| Definition | - |
>pfu_aug2.0_234.1_13850.t3 MDDGQRLMHPQQGGVNNMSGNMLQQYGMGQGDDTSDQRKQEIGDILQQIMTITDQSLDEAQARKHTLNCHRMKPALFSVL CEIKEKTVLSIRNSQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGSSAAANATAAASGGQPDSAIEHSDYRAKLAQIRQIY HTELEKYEQDLSDISDGSEIKNSDYEAKLAQIRQVYQTEYGKYEQACNEFTTHVVNLLREQSRTRPIAPKEIERMVGIIR KKFAAIEMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQISNWFG NKRIRYKKNIGKAQEEANMYAAKAASTAMNSTHDSQGRGQYISNWFGNKRIRYKKSIGKAQEEASVAMASANMASVQGGP GYNMGGSVTGQGSGMYMNLNGDNYQGSDNSVNTLRHSISQPGGYNSDSMHSTGVYEQHLNQQATPHSRGSINGSPHDIDR KPEDSEGWGAGGFMHSLDGERDGFDGDEPGLKGPKL |
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