Gene
| Gene Model ID | pfu_aug2.0_2340.1_02093 |
|---|---|
| Locus | scaffold2340.1 : 2985 ... 22465 : - |
| To GenomeBrowser | scaffold2340.1:2985..22465 |
| Genes list of scaffold | scaffold2340.1 |
| Synonym | pfu_aug1.0_13773.1_61257 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor | GO:0005230 GO:0006811 GO:0016020 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2340.1_02093.t1 | 1 | 1 | Neur_chan_LBD | 8 | 110 | 1.1e-27 | 96.6 | 2.2e-31 | 1.6e-27 | 96.0 |
| pfu_aug2.0_2340.1_02093.t1 | 1 | 1 | Neur_chan_memb | 112 | 252 | 2.3e-11 | 44.0 | 4.1e-15 | 3.0e-11 | 43.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2340.1_02093.t1 | gi|524877352|ref|XP_005095380.1| | PREDICTED: gamma-aminobutyric acid receptor subunit alpha-3-like [Aplysia californica] | 1.0e-39 |
| pfu_aug2.0_2340.1_02093.t1 | gi|507550176|ref|XP_004658898.1| | PREDICTED: gamma-aminobutyric acid receptor subunit gamma-1 [Jaculus jaculus] | 5.0e-37 |
| pfu_aug2.0_2340.1_02093.t1 | gi|676433645|ref|XP_009046968.1| | hypothetical protein LOTGIDRAFT_138508, partial [Lottia gigantea] | 7.0e-36 |
| pfu_aug2.0_2340.1_02093.t1 | gi|620961370|ref|XP_007666340.1| | PREDICTED: gamma-aminobutyric acid receptor subunit gamma-3 [Ornithorhynchus anatinus] | 2.0e-30 |
| pfu_aug2.0_2340.1_02093.t1 | gi|297292520|ref|XP_002804107.1| | PREDICTED: gamma-aminobutyric acid receptor subunit gamma-1-like [Macaca mulatta] | 1.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_2340.1_02093.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2340.1_02093.t1 atgttatcacatatttcttttcagtcatattcaatgcagtgttacctacgccagagctggtacgatgatcgtctaaaatt tgaccttgaaaatttgactcaggtcacactcagtaatagttttctcaaagacatttggaaaccaaacacgtactttctga atggtagacgatctattcagccgaatatcacagtgcctaacgtctttgttaggatcagtagtaatggcagcgtttatatg tctagaagattgactatccaagcaatatgtcctatgcaacttatggattacccgatggatagaccggtttgtccattgaa acttggaggatgagtgacaactattttgtccacggctgctattggactgatacagcgtgacggactaccacgtgtaccgt acgcaacggcgcttgatgtttaccttaatgtatgtattgtttataatctggccgccatgatacaatacgcagctgtaaac tacttcaccaaaatcatggcaaaggaaggtgggaaggaaacagcagaagatagccaagaacaatcgccaatgctcctagc ccctcatacgctagttatcccagaacctcgtggcaaatcggactctcttaattcccgccaaagacgacaaagatgtggta acttgttttggaagtgtcttgtgggtaacttccggtacagacaagaccggatacagaatgcagacgtagaagcgggaaat agtactacaccaaacagccacaagaaagatcaacagagtataacgaaacataaaagagctctcactgaagtatcataa |
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Protein
| Protein ID | pfu_aug2.0_2340.1_02093.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2340.1_02093.t1 MLSHISFQSYSMQCYLRQSWYDDRLKFDLENLTQVTLSNSFLKDIWKPNTYFLNGRRSIQPNITVPNVFVRISSNGSVYM SRRLTIQAICPMQLMDYPMDRPVCPLKLGGXVTTILSTAAIGLIQRDGLPRVPYATALDVYLNVCIVYNLAAMIQYAAVN YFTKIMAKEGGKETAEDSQEQSPMLLAPHTLVIPEPRGKSDSLNSRQRRQRCGNLFWKCLVGNFRYRQDRIQNADVEAGN STTPNSHKKDQQSITKHKRALTEVS |
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