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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2340.1_02095
Locus scaffold2340.1 : 67144 ... 74475 : -
To GenomeBrowser scaffold2340.1:67144..74475
Genes list of scaffold scaffold2340.1
Synonym pfu_aug1.0_37739.1_19644

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2340.1_02095.t1 3 1 CUT 74 153 1.9e-13 50.0 7.6e-17 5.6e-13 48.4
pfu_aug2.0_2340.1_02095.t1 1 1 Homeobox 166 217 1.2e-12 47.2 4.2e-16 3.1e-12 45.9
pfu_aug2.0_2340.1_02095.t1 3 2 CUT 223 233 1.9e-13 50.0 0.85 6300.0 -3.0
pfu_aug2.0_2340.1_02095.t1 3 3 CUT 303 314 1.9e-13 50.0 1.7 12000.0 -3.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2340.1_02095.t1 gi|699606230|ref|XP_009871879.1| PREDICTED: homeobox protein cut-like 2, partial [Apaloderma vittatum] 4.0e-08
pfu_aug2.0_2340.1_02095.t1 gi|676458443|ref|XP_009054977.1| hypothetical protein LOTGIDRAFT_161323 [Lottia gigantea] 1.0e-06
pfu_aug2.0_2340.1_02095.t1 gi|260820856|ref|XP_002605750.1| hypothetical protein BRAFLDRAFT_78017 [Branchiostoma floridae] 1.0e-06
pfu_aug2.0_2340.1_02095.t1 gi|556987618|ref|XP_005999115.1| PREDICTED: retinal homeobox protein Rx1-like [Latimeria chalumnae] 3.0e-06
pfu_aug2.0_2340.1_02095.t1 gi|268573146|ref|XP_002641550.1| C. briggsae CBR-CEH-44 protein [Caenorhabditis briggsae] 1.0e-05

Transcript
Transcript IDpfu_aug2.0_2340.1_02095.t1
Definition-
>pfu_aug2.0_2340.1_02095.t1
atggattcggacactcttgtgtgtctggaagccctagaaagaactgccgcctgggttcaccaagtatcacaaatcaaaaa
tgcggagaaaccggatccggatgaagatatttcggcgggaaaagatgagtcccttgaccagtcacgtgacgacatggatg
acaacgacttaactgaccatatgatgttctctaacatgagtgaccagttcattgattccacttactctgaaattaacatt
cctcaaacggtcaaagagttcaaagaagtattagaaaaatccggaatttctcagagatttgcagcgaagcatataatgga
gaagacaagccaaggaaatttaagtttccttttagagaaaggcaagacgaagcgatgggcggagcttagtcacagaggaa
gggtcccgtatgtacgcatgcgcagatggctagatagtgccgacgaacagcggaatacgctatcgatgctacgacaaacg
aaagacgggggcgggaagagggagaaatttactctgttccagttaatggttctgtgtagattttatgaggaggacaatac
gcccaatttaaacactcgatctctactcgcggaaaaactagacgttcctctggacagagtcactatatggttccaaaatc
aacgtgctaggggattccccgcaaagaaaatacttagtcaggcgaattttacacgaaaatctgttgatatgggatttagt
ccgggtacaactggaaatcaaatgcctacattgaattcgcctgtaaatagtgctttcattggttcaccaggtttaatgaa
tatcgctcaggaccaatcattgacaaggttgtttgagacggttggtttaaacggtgctaacgctgcacatctgcagcagt
ttcatttgacacccagacatattccgccatttttacaaatggcgaatcaaacgagagacagtactggccaatcaaattca
agctcttatccaacatcgcctgccaatcaaattaagactgaaaacactgtcacggaaccatgtacaagtggtcctgaaca
ttcattggtgcaaaacaagcttgaaacaacgaatcaaagtgttttcccacaattcaatcatagaaattcaataaatatgt
tcccaagtgctacagtgaaaaaagaatctccagtgcctttcaaatcaggcaacgatgaacctttgaacttcagtaaaaat
cacgcgatgcttagcggtaaaagtccattacattatagcaacgagtctggtgctgatgaagactgtatacaatga

Protein
Protein IDpfu_aug2.0_2340.1_02095.t1
Definition-
>pfu_aug2.0_2340.1_02095.t1
MDSDTLVCLEALERTAAWVHQVSQIKNAEKPDPDEDISAGKDESLDQSRDDMDDNDLTDHMMFSNMSDQFIDSTYSEINI
PQTVKEFKEVLEKSGISQRFAAKHIMEKTSQGNLSFLLEKGKTKRWAELSHRGRVPYVRMRRWLDSADEQRNTLSMLRQT
KDGGGKREKFTLFQLMVLCRFYEEDNTPNLNTRSLLAEKLDVPLDRVTIWFQNQRARGFPAKKILSQANFTRKSVDMGFS
PGTTGNQMPTLNSPVNSAFIGSPGLMNIAQDQSLTRLFETVGLNGANAAHLQQFHLTPRHIPPFLQMANQTRDSTGQSNS
SSYPTSPANQIKTENTVTEPCTSGPEHSLVQNKLETTNQSVFPQFNHRNSINMFPSATVKKESPVPFKSGNDEPLNFSKN
HAMLSGKSPLHYSNESGADEDCIQ

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