Gene
Gene Model ID | pfu_aug2.0_2340.1_02095 |
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Locus | scaffold2340.1 : 67144 ... 74475 : - |
To GenomeBrowser | scaffold2340.1:67144..74475 |
Genes list of scaffold | scaffold2340.1 |
Synonym | pfu_aug1.0_37739.1_19644 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2340.1_02095.t1 | 3 | 1 | CUT | 74 | 153 | 1.9e-13 | 50.0 | 7.6e-17 | 5.6e-13 | 48.4 |
pfu_aug2.0_2340.1_02095.t1 | 1 | 1 | Homeobox | 166 | 217 | 1.2e-12 | 47.2 | 4.2e-16 | 3.1e-12 | 45.9 |
pfu_aug2.0_2340.1_02095.t1 | 3 | 2 | CUT | 223 | 233 | 1.9e-13 | 50.0 | 0.85 | 6300.0 | -3.0 |
pfu_aug2.0_2340.1_02095.t1 | 3 | 3 | CUT | 303 | 314 | 1.9e-13 | 50.0 | 1.7 | 12000.0 | -3.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2340.1_02095.t1 | gi|699606230|ref|XP_009871879.1| | PREDICTED: homeobox protein cut-like 2, partial [Apaloderma vittatum] | 4.0e-08 |
pfu_aug2.0_2340.1_02095.t1 | gi|676458443|ref|XP_009054977.1| | hypothetical protein LOTGIDRAFT_161323 [Lottia gigantea] | 1.0e-06 |
pfu_aug2.0_2340.1_02095.t1 | gi|260820856|ref|XP_002605750.1| | hypothetical protein BRAFLDRAFT_78017 [Branchiostoma floridae] | 1.0e-06 |
pfu_aug2.0_2340.1_02095.t1 | gi|556987618|ref|XP_005999115.1| | PREDICTED: retinal homeobox protein Rx1-like [Latimeria chalumnae] | 3.0e-06 |
pfu_aug2.0_2340.1_02095.t1 | gi|268573146|ref|XP_002641550.1| | C. briggsae CBR-CEH-44 protein [Caenorhabditis briggsae] | 1.0e-05 |
Transcript
Transcript ID | pfu_aug2.0_2340.1_02095.t1 |
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Definition | - |
>pfu_aug2.0_2340.1_02095.t1 atggattcggacactcttgtgtgtctggaagccctagaaagaactgccgcctgggttcaccaagtatcacaaatcaaaaa tgcggagaaaccggatccggatgaagatatttcggcgggaaaagatgagtcccttgaccagtcacgtgacgacatggatg acaacgacttaactgaccatatgatgttctctaacatgagtgaccagttcattgattccacttactctgaaattaacatt cctcaaacggtcaaagagttcaaagaagtattagaaaaatccggaatttctcagagatttgcagcgaagcatataatgga gaagacaagccaaggaaatttaagtttccttttagagaaaggcaagacgaagcgatgggcggagcttagtcacagaggaa gggtcccgtatgtacgcatgcgcagatggctagatagtgccgacgaacagcggaatacgctatcgatgctacgacaaacg aaagacgggggcgggaagagggagaaatttactctgttccagttaatggttctgtgtagattttatgaggaggacaatac gcccaatttaaacactcgatctctactcgcggaaaaactagacgttcctctggacagagtcactatatggttccaaaatc aacgtgctaggggattccccgcaaagaaaatacttagtcaggcgaattttacacgaaaatctgttgatatgggatttagt ccgggtacaactggaaatcaaatgcctacattgaattcgcctgtaaatagtgctttcattggttcaccaggtttaatgaa tatcgctcaggaccaatcattgacaaggttgtttgagacggttggtttaaacggtgctaacgctgcacatctgcagcagt ttcatttgacacccagacatattccgccatttttacaaatggcgaatcaaacgagagacagtactggccaatcaaattca agctcttatccaacatcgcctgccaatcaaattaagactgaaaacactgtcacggaaccatgtacaagtggtcctgaaca ttcattggtgcaaaacaagcttgaaacaacgaatcaaagtgttttcccacaattcaatcatagaaattcaataaatatgt tcccaagtgctacagtgaaaaaagaatctccagtgcctttcaaatcaggcaacgatgaacctttgaacttcagtaaaaat cacgcgatgcttagcggtaaaagtccattacattatagcaacgagtctggtgctgatgaagactgtatacaatga |
Protein
Protein ID | pfu_aug2.0_2340.1_02095.t1 |
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Definition | - |
>pfu_aug2.0_2340.1_02095.t1 MDSDTLVCLEALERTAAWVHQVSQIKNAEKPDPDEDISAGKDESLDQSRDDMDDNDLTDHMMFSNMSDQFIDSTYSEINI PQTVKEFKEVLEKSGISQRFAAKHIMEKTSQGNLSFLLEKGKTKRWAELSHRGRVPYVRMRRWLDSADEQRNTLSMLRQT KDGGGKREKFTLFQLMVLCRFYEEDNTPNLNTRSLLAEKLDVPLDRVTIWFQNQRARGFPAKKILSQANFTRKSVDMGFS PGTTGNQMPTLNSPVNSAFIGSPGLMNIAQDQSLTRLFETVGLNGANAAHLQQFHLTPRHIPPFLQMANQTRDSTGQSNS SSYPTSPANQIKTENTVTEPCTSGPEHSLVQNKLETTNQSVFPQFNHRNSINMFPSATVKKESPVPFKSGNDEPLNFSKN HAMLSGKSPLHYSNESGADEDCIQ |