Gene
| Gene Model ID | pfu_aug2.0_2341.1_05494 |
|---|---|
| Locus | scaffold2341.1 : 41499 ... 45945 : - |
| To GenomeBrowser | scaffold2341.1:41499..45945 |
| Genes list of scaffold | scaffold2341.1 |
| Synonym | pfu_aug1.0_79755.1_13222 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein hexim1 | GO:0005515 GO:0005634 GO:0007507 GO:0045892 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2341.1_05494.t1 | 2 | 1 | HEXIM | 53 | 68 | 3.1e-38 | 130.7 | 0.3 | 2200.0 | -1.3 |
| pfu_aug2.0_2341.1_05494.t1 | 2 | 2 | HEXIM | 91 | 227 | 3.1e-38 | 130.7 | 4.19969e-42 | 3.1e-38 | 130.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2341.1_05494.t1 | gi|507655965|ref|XP_004634006.1| | PREDICTED: protein HEXIM1 [Octodon degus] | 8.0e-34 |
| pfu_aug2.0_2341.1_05494.t1 | gi|667291134|ref|XP_008577768.1| | PREDICTED: protein HEXIM1 [Galeopterus variegatus] | 4.0e-33 |
| pfu_aug2.0_2341.1_05494.t1 | gi|512996579|ref|XP_004859875.1| | PREDICTED: protein HEXIM1 [Heterocephalus glaber] | 4.0e-33 |
| pfu_aug2.0_2341.1_05494.t1 | gi|514453395|ref|XP_003465713.2| | PREDICTED: protein HEXIM1 [Cavia porcellus] | 5.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_2341.1_05494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2341.1_05494.t1 atggcagtggggcgattgctgggtgatgtggactcaaaacacgaaatgatcctttcatctactagagaagattccattct gagagaaaacggcagtccaagggaatcgagtctcaaaaaagaaagaaatgaatcgtcagggatcgaaaataatgatgagg cacttgaggggagtgaatccgcatcggaaaataactctgatcaatgtgacaaaaataagaagaggagacggaggagggtc aaaggggggaaacatcataaaaaggcgaaatggaaaccatatgaaaagcttagttggactgaacgtagagatttagaaga aaaagagagcctgcgagcgaatcagcgacgtgaggaggcgtttgcgcatggtcaccccgtggcacctttcaacaccacac agtttctaattgatgaccataacaacattgatcaagggctaaaggacggagaagtcattcgacataattcaagagaatca aacgatggatcggtgtcgggaagcgatacttcggaagatagctactcgtctccggatcctgaagatacagggtcggactt tttggagaaagaattcgaggaaacgtacgacagcattcacgcggaacgacttcagaagatgagtaaagatgaactgatca aagattacattgaaatggaaactaaacttgaacgattgcaaaaaaggatggttcgaaggaagaaaaatcgtggcagttcc gcatcactgagcagcagcggagaagaatttttggacacggacaatttacggagactaggagaagagctgctgaaactgaa agcggagaatgcaaaacttagaaacatgttatcaaagtcagaagaaccgatggatagctag |
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Protein
| Protein ID | pfu_aug2.0_2341.1_05494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2341.1_05494.t1 MAVGRLLGDVDSKHEMILSSTREDSILRENGSPRESSLKKERNESSGIENNDEALEGSESASENNSDQCDKNKKRRRRRV KGGKHHKKAKWKPYEKLSWTERRDLEEKESLRANQRREEAFAHGHPVAPFNTTQFLIDDHNNIDQGLKDGEVIRHNSRES NDGSVSGSDTSEDSYSSPDPEDTGSDFLEKEFEETYDSIHAERLQKMSKDELIKDYIEMETKLERLQKRMVRRKKNRGSS ASLSSSGEEFLDTDNLRRLGEELLKLKAENAKLRNMLSKSEEPMDS |
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