Gene
| Gene Model ID | pfu_aug2.0_2346.1_22032 |
|---|---|
| Locus | scaffold2346.1 : 226 ... 17687 : + |
| To GenomeBrowser | scaffold2346.1:226..17687 |
| Genes list of scaffold | scaffold2346.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nicotinic acetylcholine receptor subunit a2 | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2346.1_22032.t1 | 1 | 1 | Neur_chan_LBD | 198 | 364 | 2.2e-30 | 105.4 | 1.3e-33 | 3.2e-30 | 104.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2346.1_22032.t1 | gi|291229474|ref|XP_002734701.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-9-like [Saccoglossus kowalevskii] | 1.0e-29 |
| pfu_aug2.0_2346.1_22032.t1 | gi|746840492|ref|XP_011050468.1| | PREDICTED: acetylcholine receptor subunit alpha-L1 isoform X1 [Acromyrmex echinatior] | 2.0e-29 |
| pfu_aug2.0_2346.1_22032.t1 | gi|260817508|ref|XP_002603628.1| | hypothetical protein BRAFLDRAFT_101358 [Branchiostoma floridae] | 7.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_2346.1_22032.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2346.1_22032.t1 atggacattaattttgtgaagcccgcaattctcaactgcacttgctgctgctatggtaccggctatggtaccggcgctca tcccctactgtcgaccgctctgatcgctgacatacagaatactgtcaaacatgcagttcaggatgctgttaaaactctca aagctgagattacaaacctcacctctcgtattgatgaaaacgagtgttatattgcgtgtcttactggtgataacaaagtc gatttcctgagttcacaagtgaagcagcttcagtctgatgtcgaagaattgcgcgggggtctcggacagctggcgcaata cggccgtcgcaactcattgagattccataatgttactgtcccagaatctggtgataccgatgatgttatagtccagctat gtcacgacaagctcgacgtagtgcggacagggttgacgggagaggttggagagggaaggggtgccggatatggagggaag ggagccaagggagataggaagagaggaggacaggaggaagggagaagcaggatgggaaaggaaacaattaattctttttt aaaggtgtcttcttttaatccggatagtgtaatcaaaaggagagatcaaaagcttgtggttgatgtatggattactttac gatggcgtgacttgcgtctaatatggaaccctaattcattttacggcgtcaaatctgtaagcgtccctggtaaaatgttg tggcgaccagatatcactttgtacaatggcattggtgctataatgacgtataatgatgataggcggctggtattgaataa caatggaatgattctatggctacttcctgcacgattagaaagtatctgtaatgatatgacgctggatggtggtcaaaatg tcacctgcaaatggaaatttgggtcatggacctataatggattacagttaaacctcactcattcagacagccagcttggc atgtcgaactactttccgagtagggacctttacgttgttgatgttgcgtcagatctaaatgtagtcagatacccttgctg tccagagccttacccggatgtaacgtataaaatccttctacgaaggaacatgttcaggcaaccaaatcaatag |
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Protein
| Protein ID | pfu_aug2.0_2346.1_22032.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2346.1_22032.t1 MDINFVKPAILNCTCCCYGTGYGTGAHPLLSTALIADIQNTVKHAVQDAVKTLKAEITNLTSRIDENECYIACLTGDNKV DFLSSQVKQLQSDVEELRGGLGQLAQYGRRNSLRFHNVTVPESGDTDDVIVQLCHDKLDVVRTGLTGEVGEGRGAGYGGK GAKGDRKRGGQEEGRSRMGKETINSFLKVSSFNPDSVIKRRDQKLVVDVWITLRWRDLRLIWNPNSFYGVKSVSVPGKML WRPDITLYNGIGAIMTYNDDRRLVLNNNGMILWLLPARLESICNDMTLDGGQNVTCKWKFGSWTYNGLQLNLTHSDSQLG MSNYFPSRDLYVVDVASDLNVVRYPCCPEPYPDVTYKILLRRNMFRQPNQ |
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