Gene
| Gene Model ID | pfu_aug2.0_2346.1_22033 |
|---|---|
| Locus | scaffold2346.1 : 19703 ... 45275 : - |
| To GenomeBrowser | scaffold2346.1:19703..45275 |
| Genes list of scaffold | scaffold2346.1 |
| Synonym | pfu_aug1.0_4365.1_37858 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transportin-3 isoform x1 | GO:0006886 GO:0008536 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2346.1_22033.t1 | 4 | 1 | Xpo1 | 102 | 249 | 9.5e-29 | 100.2 | 5.4e-30 | 4.0e-26 | 91.7 |
| pfu_aug2.0_2346.1_22033.t1 | 4 | 2 | Xpo1 | 461 | 525 | 9.5e-29 | 100.2 | 0.00034 | 2.5 | 7.9 |
| pfu_aug2.0_2346.1_22033.t1 | 4 | 3 | Xpo1 | 748 | 772 | 9.5e-29 | 100.2 | 0.49 | 3600.0 | -2.3 |
| pfu_aug2.0_2346.1_22033.t1 | 4 | 4 | Xpo1 | 820 | 857 | 9.5e-29 | 100.2 | 0.22 | 1700.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2346.1_22033.t1 | gi|676475123|ref|XP_009060371.1| | hypothetical protein LOTGIDRAFT_177445 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2346.1_22033.t1 | gi|524894887|ref|XP_005103934.1| | PREDICTED: transportin-3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2346.1_22033.t1 | gi|597762202|ref|XP_007245074.1| | PREDICTED: transportin-3 isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_2346.1_22033.t1 | gi|742169445|ref|XP_010885245.1| | PREDICTED: transportin-3 [Esox lucius] | 0.0 |
| pfu_aug2.0_2346.1_22033.t1 | gi|657756204|ref|XP_008313653.1| | PREDICTED: transportin-3 [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2346.1_22033.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2346.1_22033.t1 atggaaagtgaaccgtctttagagacggtgcaccaagcacttcaagccctgtataacaatccagatattcacggcaaaga aaaagcctctgtttggcttggagaattgcaaagatcagtctatgcttggcaagtatcagaccatctgcttaggcttaacc aaagtctggagtccagttactttgctgctcagaccatgagaacaaaaatccagtatgcttttcatgagctcccagctgct tcacataattcattacgagattctttacttgagcatgtcagcaaactgaatgcagatactcaacctattatactcacaca gctcagccttgccctagctgatttagcattacagctagctacatggaaagattcaaccatggatttagtgcaaaaatttg gaagcaatccacaacaacttcctttccttctagaagttttaacagtattacctgaagaggtaaatagtcgttcactgcgt cttggtgccaataggagaacagaagtaacacaagagttagaaaaggctgcacctacagttttacagttattgacacattg tgtagaaagccaggattgtgatgagaaaacccaagtaaaagtcttccgttgtttgggtagctggttctctctgggcgtta tacctgatacagctatagtcagcagtaaattgttaatggcaccgtttcaggcactggccaatccacagtgcagtaatagc ttacatgaagccgcctcagactgtatatgttcagcactctattgttgtgaggatctggagaagcatatgcagttagccac agctttctaccatggtgtactaactctaccagaggcctaccatatgtctgtagccatggaggatatggacaagtctataa attactgccgtgtgttcacagagttagcagagtcattattagaagtaatggttacagctcccaatcatggtttgggtgat ttaacaattttagaattactcctcacatgtgttgggcatcacttatatgaagtagcggaaatcacctttaacttttggta tagaatgtcagaggagttatataaatctaagaatgagagtttaacggaggtatttaagccgtatatacagaggctgattg tgtcgttatgtcatcattgtcagatggacacggatcacgaaggtatcccatcccatacagatgattttggggagttcaga ttacgagtgtcagagttgatcaaagatgttatatttattgttggttcttcctcttgttttacccaaatgtttgaaaattt aaaatcccagtcagacagtacatcttgggatgtgacagaagcttctctttttataatgacagcagttgcgaaaaatattt tacctgatgagaatgagatagttccgcaggttgttaaagctattttatcgatacctaacactgtacatatagctgttaga cataccagtatagctttatttggagaacttagtgaatggatagaggttcacccagactatttagatcccatattgcagtt tttgttagctggtctacaggaacctaagctttctactgctgcagccaatgccttacagagtatatctacgacgtgccgga ctcagatggtggaacattttggtgggctggtccagatcgtatctgctatggatacgtttagtctgtcaaatgaggctgcc attggtctgttaaagggtgctgcaacaattttgggtaaattaccccaggataaagtcgctgatggtttacgtcagctgtg ttcatttcaacttacccctctaaataagttaatagcggaagcagccaataacccaaagcaggggagtacgacagatccta ctgtatggttagatagactggcggctatatttaggcatacaaatcctgagatgacaaatggtcagatacatccatgtcaa cctgtgataaatgagatttggccagtgttatcacaggcgtgtgataagtatcaacaggatgtaaggatcatagaacggtg ctgtagatgtattaggtttgccatacgatgcctcggaaaaagttctgcttcacttttaacccctctagtcacacaaatga taacactataccaaatgcaccagcattcatgtttcctgtatttaggcagtattttagtggatgagtatggaatggaacac tcatgtcaacctggtctactcaatatgttagaagctttttgtgtgccaacattcaaagttctagaagaacacaatggatt acggaaccatccagatactgttgatgatttgtttaggttatgtttaaggtttgttcagcaagctcccttgccatatttac agtgtaagatggccaagcccattctgtgttgtgcaatagcggcgtgctccttggaccacaaggacgcaaacgcatctgtc atgaaatatttgtcagacttcctcacgtgtgctacaaaaaaggaggacaaggatgactttcagacgcggcaatccatcgt gaaatccctactccatgaccatggacaggccctggtacacgcccttataaacgcctgtatattctgtttacctaccttta tgaccatagatctgggagaagttatatatgaaataatgcagattgacaggccacaattctgccgatggttagagactacg ttaaaagctcttcccacagagaatagcggtggagccgtaacagccacacataaacaactcacagatttccacaaggctgt tacaagtgctgagagcatgaagcaagtgtcaaacggattacgggatttttgccatacatgcagtatatgcaaacagtcat tgggtcaaggtcaaggtcattgtatagaaactgaggacattagatgcaaaccacatttgatgtatggatacttacctaga gaaaaagtactgatcaaagggtcagtagccaaaaactcaaggtcatttttacttttatga |
|
Protein
| Protein ID | pfu_aug2.0_2346.1_22033.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2346.1_22033.t1 MESEPSLETVHQALQALYNNPDIHGKEKASVWLGELQRSVYAWQVSDHLLRLNQSLESSYFAAQTMRTKIQYAFHELPAA SHNSLRDSLLEHVSKLNADTQPIILTQLSLALADLALQLATWKDSTMDLVQKFGSNPQQLPFLLEVLTVLPEEVNSRSLR LGANRRTEVTQELEKAAPTVLQLLTHCVESQDCDEKTQVKVFRCLGSWFSLGVIPDTAIVSSKLLMAPFQALANPQCSNS LHEAASDCICSALYCCEDLEKHMQLATAFYHGVLTLPEAYHMSVAMEDMDKSINYCRVFTELAESLLEVMVTAPNHGLGD LTILELLLTCVGHHLYEVAEITFNFWYRMSEELYKSKNESLTEVFKPYIQRLIVSLCHHCQMDTDHEGIPSHTDDFGEFR LRVSELIKDVIFIVGSSSCFTQMFENLKSQSDSTSWDVTEASLFIMTAVAKNILPDENEIVPQVVKAILSIPNTVHIAVR HTSIALFGELSEWIEVHPDYLDPILQFLLAGLQEPKLSTAAANALQSISTTCRTQMVEHFGGLVQIVSAMDTFSLSNEAA IGLLKGAATILGKLPQDKVADGLRQLCSFQLTPLNKLIAEAANNPKQGSTTDPTVWLDRLAAIFRHTNPEMTNGQIHPCQ PVINEIWPVLSQACDKYQQDVRIIERCCRCIRFAIRCLGKSSASLLTPLVTQMITLYQMHQHSCFLYLGSILVDEYGMEH SCQPGLLNMLEAFCVPTFKVLEEHNGLRNHPDTVDDLFRLCLRFVQQAPLPYLQCKMAKPILCCAIAACSLDHKDANASV MKYLSDFLTCATKKEDKDDFQTRQSIVKSLLHDHGQALVHALINACIFCLPTFMTIDLGEVIYEIMQIDRPQFCRWLETT LKALPTENSGGAVTATHKQLTDFHKAVTSAESMKQVSNGLRDFCHTCSICKQSLGQGQGHCIETEDIRCKPHLMYGYLPR EKVLIKGSVAKNSRSFLLL |
|