Gene
| Gene Model ID | pfu_aug2.0_235.1_17160 |
|---|---|
| Locus | scaffold235.1 : 157776 ... 173179 : + |
| To GenomeBrowser | scaffold235.1:157776..173179 |
| Genes list of scaffold | scaffold235.1 |
| Synonym | pfu_aug1.0_4195.1_44891 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_235.1_17160.t1 | 6 | 1 | zf-B_box | 8 | 15 | 2.8e-11 | 43.1 | 0.93 | 3400.0 | -2.0 |
| pfu_aug2.0_235.1_17160.t1 | 4 | 1 | PHD | 8 | 15 | 3.3e-08 | 33.0 | 1.0 | 3700.0 | -2.3 |
| pfu_aug2.0_235.1_17160.t1 | 6 | 2 | zf-B_box | 56 | 98 | 2.8e-11 | 43.1 | 4.1e-09 | 1.5e-05 | 24.7 |
| pfu_aug2.0_235.1_17160.t1 | 4 | 2 | PHD | 58 | 88 | 3.3e-08 | 33.0 | 0.13 | 480.0 | 0.5 |
| pfu_aug2.0_235.1_17160.t1 | 6 | 3 | zf-B_box | 118 | 155 | 2.8e-11 | 43.1 | 8.2e-12 | 3.0e-08 | 33.4 |
| pfu_aug2.0_235.1_17160.t1 | 4 | 3 | PHD | 121 | 150 | 3.3e-08 | 33.0 | 0.3 | 1100.0 | -0.7 |
| pfu_aug2.0_235.1_17160.t1 | 4 | 4 | PHD | 701 | 745 | 3.3e-08 | 33.0 | 8.9e-12 | 3.3e-08 | 33.0 |
| pfu_aug2.0_235.1_17160.t1 | 6 | 4 | zf-B_box | 704 | 722 | 2.8e-11 | 43.1 | 4.0 | 15000.0 | -4.3 |
| pfu_aug2.0_235.1_17160.t1 | 6 | 5 | zf-B_box | 737 | 747 | 2.8e-11 | 43.1 | 0.23 | 850.0 | -0.1 |
| pfu_aug2.0_235.1_17160.t1 | 1 | 1 | Bromodomain | 781 | 863 | 2.8e-20 | 72.0 | 2.1e-23 | 7.6e-20 | 70.6 |
| pfu_aug2.0_235.1_17160.t1 | 6 | 6 | zf-B_box | 781 | 795 | 2.8e-11 | 43.1 | 0.14 | 510.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_235.1_17160.t1 | gi|551491497|ref|XP_005797319.1| | PREDICTED: transcription intermediary factor 1-alpha-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_235.1_17160.t1 | gi|617374587|ref|XP_007578202.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X1 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_235.1_17160.t1 | gi|658919178|ref|XP_008399337.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_235.1_17160.t1 | gi|617374595|ref|XP_007578220.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X2 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_235.1_17160.t1 | gi|658919180|ref|XP_008399338.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X2 [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_235.1_17160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_235.1_17160.t1 atgtctgaggacagctgttctatcctatgtccagcatgtaactctactgtggagaaacaacatgtgttggataacatgtt tgtaggagcatgccttgccccaatcactatagaggaggacgatgacggagacaaacaagatgttgaatcggaaaaaccag attctcccaagtgtttatgttgtgatgacagccaggaggccacttcattctgtactgactgtaaggaatggctctgtgat cagtgtgtagctgctcataaacgagtcaaactcacaaaggatcatacaatacaaactaaggaagaagcacagaactcttt ggaaagaaatgaggagccaactccagagaaactggctcactgcaccatacataaaaatgaggagttaaagttattctgtg agacgtgtgacaagttaacatgtcgggactgtcagcttctggagcacaaggatcataagtatcagttcttaactgaggct atcgtacagcaacgtgaacaattacagatggcagtgcttaaactgaaacagaaacgccaaaattatcaacaggcagataa aatactggcctccaaaaacctggagctccgaacaaaattaaacgatgtatgtgaaagtgtaagggaggtttgtagtgcgg tctgcaaggaaatcaacagtcatgcggatacgctggtcaattacctagaaaaatatatcaacaagaagactacagttata atggataagaaaactaatgtagaggaagctttaagtaagatgaagcatgctatagacttcgtagaaaatgcattgaccgt gggtgatgattcctccatactgtacactagaggagtcatgatgaagacgctcaagttactttctacagctggcattgcat ttgacccaagtattctgaattattcaatcacttatgagaatgaaaaggacttcttattgaagaatgtgtataaggcagga tcgctgctaattgatgggtccaaattctcaggtggagcaacgccctcacaacaacccacgccacagggtatagctcatca gattcctacgcaacctgtccgcggtcagtctgtgccagctgctcgccaaaaccagcctccaaatcgccaacagtggcagt ccaatcagatttccaaccagatggagaaatggaaacatcttcccattgagcaacaaaaccagcttaggaagaaaatgtac gaaaagttcatgcagcaacaacgtgaatctcaaatgcaagggtcgatgggtagtcatggtaatgcacctccctcctataa caactctataggaccagggggtaatccagtcaactcgtcactccaaaatctgagcaatttgatcaacaacacaccaaact cagggatctctacctcaatgccatacaatcgccatggatacccgccacagagtaccgctagaaacagctcggtacatgca tcagggacatattacccaccaggacataatatgtacaatacaatgccacacccaggacacccaggacaccaagcaggtat ggccccctctcagggcatggccagacctcttatgactacccacccttacaatagtgctgctagacgtgtaccaaacacgt ttccgggtgggggtgcagaggggggagtcaaagaccaaaggcggtctgcagaagacccaaatgatcaacagaagaaaaac tcacccttgggacataagtcctggaattttcatgatatggcaaacagatttcagccttcgtctggcactgcaatgccacc acagtcttcacaaggtcctaatggtgctgatagagtcaggagtcctcagatgtcacctggtccaacaaaccaatctcgtg gtgctgttataaatctcactgacaacccaagtagctcaggaaaaactggatctgacagtcacaaacctcaacccacagca aacacagaacctagtcataaaccacaaccatcgagtagttcatcagccacacctcctcttaccaggactcctccccctct catacgttttgaccccgcccctcagcctgtccctgccccccacatgcccaccaccccagggaaggtgatgccgtccagta atgatgatcctaatgaagattactgtgctgtatgccagaatggtggagatctcctgtgttgtgaatcctgtcctaaagtc ttccatctcaaatgtcacattccagaactcaaggaattcccaataggagaatggcgatgttctttatgtgagaaggagga ggaagtaactctcacagaaccagagaagaaggattacggaattataggtcctggcaaacggaaagccccttcagggctaa caaacaaggaaatcaaagtatgtgagaggatactcttagagctatactgtaacaaagacagtacaatattccatgaacct gtcagtaaagcggtaccaaactactataagattatcacaaagcccatagatttctccaagatcaaatctaagctacagcg ccatcattttaaccattataatagtatagaggatttcatgtcagactgtaaactggtgttcagaaactgctttacatata acggggcagggacacctatttatagacaaggtcagctagtagaaggagagtatgagagactaatacgcaagtacctaccg tgttacgtggaatatttacaggacttggagagaaaaacagagaccccactcagtgattcctccgagggcagcaatccaga aaaacgtatgaagaaaaagagatacgaggaagatcctgacgtagatccaagtcgactagactcttacagctga |
|
Protein
| Protein ID | pfu_aug2.0_235.1_17160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_235.1_17160.t1 MSEDSCSILCPACNSTVEKQHVLDNMFVGACLAPITIEEDDDGDKQDVESEKPDSPKCLCCDDSQEATSFCTDCKEWLCD QCVAAHKRVKLTKDHTIQTKEEAQNSLERNEEPTPEKLAHCTIHKNEELKLFCETCDKLTCRDCQLLEHKDHKYQFLTEA IVQQREQLQMAVLKLKQKRQNYQQADKILASKNLELRTKLNDVCESVREVCSAVCKEINSHADTLVNYLEKYINKKTTVI MDKKTNVEEALSKMKHAIDFVENALTVGDDSSILYTRGVMMKTLKLLSTAGIAFDPSILNYSITYENEKDFLLKNVYKAG SLLIDGSKFSGGATPSQQPTPQGIAHQIPTQPVRGQSVPAARQNQPPNRQQWQSNQISNQMEKWKHLPIEQQNQLRKKMY EKFMQQQRESQMQGSMGSHGNAPPSYNNSIGPGGNPVNSSLQNLSNLINNTPNSGISTSMPYNRHGYPPQSTARNSSVHA SGTYYPPGHNMYNTMPHPGHPGHQAGMAPSQGMARPLMTTHPYNSAARRVPNTFPGGGAEGGVKDQRRSAEDPNDQQKKN SPLGHKSWNFHDMANRFQPSSGTAMPPQSSQGPNGADRVRSPQMSPGPTNQSRGAVINLTDNPSSSGKTGSDSHKPQPTA NTEPSHKPQPSSSSSATPPLTRTPPPLIRFDPAPQPVPAPHMPTTPGKVMPSSNDDPNEDYCAVCQNGGDLLCCESCPKV FHLKCHIPELKEFPIGEWRCSLCEKEEEVTLTEPEKKDYGIIGPGKRKAPSGLTNKEIKVCERILLELYCNKDSTIFHEP VSKAVPNYYKIITKPIDFSKIKSKLQRHHFNHYNSIEDFMSDCKLVFRNCFTYNGAGTPIYRQGQLVEGEYERLIRKYLP CYVEYLQDLERKTETPLSDSSEGSNPEKRMKKKRYEEDPDVDPSRLDSYS |
|