Gene
| Gene Model ID | pfu_aug2.0_2350.1_02100 |
|---|---|
| Locus | scaffold2350.1 : 44919 ... 47165 : - |
| To GenomeBrowser | scaffold2350.1:44919..47165 |
| Genes list of scaffold | scaffold2350.1 |
| Synonym | pfu_aug1.0_3723.1_30513 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2350.1_02100.t1 | 2 | 1 | OPA3 | 1 | 56 | 1.4e-06 | 28.1 | 1.6e-09 | 2.7e-06 | 27.1 |
| pfu_aug2.0_2350.1_02100.t1 | 2 | 2 | OPA3 | 53 | 78 | 1.4e-06 | 28.1 | 0.08 | 130.0 | 2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2350.1_02100.t1 | gi|24649440|ref|NP_651192.1| | CG13601, isoform A [Drosophila melanogaster] | 2.0e-06 |
| pfu_aug2.0_2350.1_02100.t1 | gi|442620737|ref|NP_001262890.1| | CG13601, isoform B [Drosophila melanogaster] | 3.0e-06 |
| pfu_aug2.0_2350.1_02100.t1 | gi|195056089|ref|XP_001994945.1| | GH17511 [Drosophila grimshawi] | 4.0e-06 |
| pfu_aug2.0_2350.1_02100.t1 | gi|736247780|ref|XP_010787037.1| | PREDICTED: optic atrophy 3 protein [Notothenia coriiceps] | 4.0e-06 |
| pfu_aug2.0_2350.1_02100.t1 | gi|198452354|ref|XP_001358736.2| | GA12394 [Drosophila pseudoobscura pseudoobscura] | 8.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_2350.1_02100.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2350.1_02100.t1 atgttgaatgacgctctcattttctcaatagcggcaggtgtgttatatttagaataccgacgtggtcagatcaattccag tttggagaaagcaagacatgaagaagaacttcaagaactagagaataagataataagtatacgtatgataactgaagaac aagacgccaaactgagggagatgaagcgggaaatatacgatctccagagtaagaattacagtctaacgtcaaggttaaaa gacacgttagtgggacaaagaccaaaaacaatagaagctggaaacttaaaagttgttgttcatcctgatgcagaagaaag tgacgagaaatcaaagtaa |
|
Protein
| Protein ID | pfu_aug2.0_2350.1_02100.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2350.1_02100.t1 MLNDALIFSIAAGVLYLEYRRGQINSSLEKARHEEELQELENKIISIRMITEEQDAKLREMKREIYDLQSKNYSLTSRLK DTLVGQRPKTIEAGNLKVVVHPDAEESDEKSK |
|