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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2351.1_05497
Locus scaffold2351.1 : 9472 ... 27375 : -
To GenomeBrowser scaffold2351.1:9472..27375
Genes list of scaffold scaffold2351.1
Synonym pfu_aug1.0_19654.1_61931

Manual annotation
Annotation by Blast2GO
Annotation GO
plasminogen- partial GO:0003824

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2351.1_05497.t1 4 1 Ldl_recept_a 13 48 3.2e-27 94.1 1.0e-11 7.7e-08 32.1
pfu_aug2.0_2351.1_05497.t1 4 1 Kringle 40 54 1.1e-27 95.9 1.1 8200.0 -3.1
pfu_aug2.0_2351.1_05497.t1 4 2 Ldl_recept_a 50 85 3.2e-27 94.1 1.6e-11 1.2e-07 31.5
pfu_aug2.0_2351.1_05497.t1 4 2 Kringle 77 87 1.1e-27 95.9 2.0 15000.0 -4.0
pfu_aug2.0_2351.1_05497.t1 4 3 Ldl_recept_a 134 169 3.2e-27 94.1 1.3e-12 9.4e-09 35.0
pfu_aug2.0_2351.1_05497.t1 4 3 Kringle 180 248 1.1e-27 95.9 7.5e-18 5.5e-14 52.0
pfu_aug2.0_2351.1_05497.t1 4 4 Kringle 259 327 1.1e-27 95.9 1.9e-19 1.4e-15 57.0
pfu_aug2.0_2351.1_05497.t1 4 4 Ldl_recept_a 325 341 3.2e-27 94.1 2.0e-05 0.15 11.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2351.1_05497.t1 gi|542250797|ref|XP_005461555.1| PREDICTED: plasminogen-like [Oreochromis niloticus] 2.0e-26
pfu_aug2.0_2351.1_05497.t1 gi|548545935|ref|XP_005754192.1| PREDICTED: plasminogen-like, partial [Pundamilia nyererei] 5.0e-26
pfu_aug2.0_2351.1_05497.t1 gi|41393105|ref|NP_958880.1| plasminogen precursor [Danio rerio] 4.0e-25
pfu_aug2.0_2351.1_05497.t1 gi|632935031|ref|XP_007887440.1| PREDICTED: apolipoprotein(a)-like [Callorhinchus milii] 4.0e-25
pfu_aug2.0_2351.1_05497.t1 gi|498984178|ref|XP_004550726.1| 4.0e-25

Transcript
Transcript IDpfu_aug2.0_2351.1_05497.t1
Definition-
>pfu_aug2.0_2351.1_05497.t1
atggatagtataggattggctgatgtggataaaaggacatgtgggaagaagcagtaccagtgctttgatgggtcttgcat
cggtatcagcaagttctgtgattcaaaccaggactgtccagacaattccgacgaacatgagtgctggacatgtgggaaga
agcagtaccagtgctttgatgggtcttgcatcggtatcagcaagttctgtgattcaaaccaggactgtccagacaattcc
gacgaacatgagtgctatggcaaattcttggctgcaaacgttacatacgggaaaagcgcaacagttatggagttagaagc
aagtttatcgggagcgggtgattttgctcttcttgcaatagatgacgtcaatattgtgaatgatatgtgtccaggtagga
cttgctccaacatggaataccagtgcaatgatggattatgtattgatatgggccgattctgtgacttcttccctgactgt
gaggaccaatcagatgaaacaaactgcaaaacagactgtcttttgccaaatgataaagtcggcatcaattactacgaaac
tcgtagccttactgcatcaggtcaagcatgtatagaatggaaaacggtgtatggaatttttcataattttgagctggtga
agaatcttgcaaatgtgtgtaggaacccggatgggcgatccggtccttggtgtttcacagacatgtcgactggatcctgg
gaatattgtggtattaaccactgtgcaatggaatgtttggcacctgatgatagatatggaatgaactacaggggagtcat
taacaagacaaaatgtggaataccatgtcaacgttgggatacgcagattccacatacacacaagttcaaattgaatggct
cggaaaactactgtcggaaccttggagatcatacatatatctggtgttacacaacagatcctgacacacgctgggacgag
tgtccgtcattaccacaatgtgatgatgaatggatgtgtaaaagtggacaatgcataccattanctcggatgtga

Protein
Protein IDpfu_aug2.0_2351.1_05497.t1
Definition-
>pfu_aug2.0_2351.1_05497.t1
MDSIGLADVDKRTCGKKQYQCFDGSCIGISKFCDSNQDCPDNSDEHECWTCGKKQYQCFDGSCIGISKFCDSNQDCPDNS
DEHECYGKFLAANVTYGKSATVMELEASLSGAGDFALLAIDDVNIVNDMCPGRTCSNMEYQCNDGLCIDMGRFCDFFPDC
EDQSDETNCKTDCLLPNDKVGINYYETRSLTASGQACIEWKTVYGIFHNFELVKNLANVCRNPDGRSGPWCFTDMSTGSW
EYCGINHCAMECLAPDDRYGMNYRGVINKTKCGIPCQRWDTQIPHTHKFKLNGSENYCRNLGDHTYIWCYTTDPDTRWDE
CPSLPQCDDEWMCKSGQCIPLXRM

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