Gene
| Gene Model ID | pfu_aug2.0_2368.1_28779 |
|---|---|
| Locus | scaffold2368.1 : 73706 ... 84586 : + |
| To GenomeBrowser | scaffold2368.1:73706..84586 |
| Genes list of scaffold | scaffold2368.1 |
| Synonym | pfu_aug1.0_6538.1_09374 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2368.1_28779.t1 | 1 | 1 | HLH | 19 | 65 | 6.8e-06 | 25.6 | 7.1e-09 | 1.8e-05 | 24.3 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 1 | PAS | 89 | 147 | 7.2e-06 | 25.7 | 5.8e-05 | 0.14 | 11.9 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 1 | PAS_11 | 94 | 206 | 8.3e-18 | 64.3 | 0.014 | 34.0 | 4.4 |
| pfu_aug2.0_2368.1_28779.t1 | 3 | 1 | PAS_9 | 95 | 147 | 8.5e-06 | 26.0 | 0.0013 | 3.3 | 8.1 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 1 | PAS_3 | 105 | 147 | 1.4e-12 | 47.5 | 0.0015 | 3.6 | 7.7 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 2 | PAS_11 | 226 | 335 | 8.3e-18 | 64.3 | 3.6e-19 | 8.8e-16 | 57.8 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 2 | PAS | 226 | 308 | 7.2e-06 | 25.7 | 9.7e-05 | 0.24 | 11.1 |
| pfu_aug2.0_2368.1_28779.t1 | 3 | 2 | PAS_9 | 234 | 308 | 8.5e-06 | 26.0 | 1.3e-05 | 0.031 | 14.6 |
| pfu_aug2.0_2368.1_28779.t1 | 2 | 2 | PAS_3 | 238 | 308 | 1.4e-12 | 47.5 | 8.8e-13 | 2.2e-09 | 37.3 |
| pfu_aug2.0_2368.1_28779.t1 | 3 | 3 | PAS_9 | 752 | 764 | 8.5e-06 | 26.0 | 5.6 | 14000.0 | -3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2368.1_28779.t1 | gi|676453597|ref|XP_009053407.1| | hypothetical protein LOTGIDRAFT_175042 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2368.1_28779.t1 | gi|512927687|ref|XP_004931397.1| | PREDICTED: neuronal PAS domain-containing protein 4-like [Bombyx mori] | 0.0 |
| pfu_aug2.0_2368.1_28779.t1 | gi|391347770|ref|XP_003748127.1| | PREDICTED: neuronal PAS domain-containing protein 4-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_2368.1_28779.t1 | gi|498934344|ref|XP_004519854.1| | 0.0 | |
| pfu_aug2.0_2368.1_28779.t1 | gi|642911012|ref|XP_008193508.1| | PREDICTED: neuronal PAS domain-containing protein 4 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2368.1_28779.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2368.1_28779.t1 atggcccctagtccagtggaagacatttctttactagatcttgagaggtccaacaagggcgcatcaaaacagagacgaga tcagattaacaatgaaattggcacgatgcgcgaccttttacctttaccagagagttcccgccagcgtctctcccaactcc aaattatgtcccttagttgtgtcttcatccgcaagtgcaacatactccaaaaattattttcatcacctctacctccgccc actgatcccccatgtgatttttctcagtcccttactggttttatccttgtaacaactagagatggtaagctggtctacat ctcggagaatgttactgaataccttggtcactcaatggtcgatatgaagactcaaggagacagtctttttgatattgttg acaagagagatcatagcacggtgcgtgcgcagcttttacagggtgggtccgatgtcgatcccgacctacaagtcagcttc ttttgccgaatgaacatgtccagaactttgaaacgacaagcgggatttggagacgtaaaggttatgcatgtgaaaggaca ctttgccgatgtaccagggcaggaaccaggcagcgagcagcaagtattcatggccttatgtacgccactgatcaccccgg atgtcaaagaaagtctcatccaaaacaacacaatggttttcaaatccgttcacaaattagacatgaacttcatcgaggtt acacaaaatggagagtatcaccttggcaaaacgtcggaggaactaaccagccaatcatggtattcttttcttcaccctga ggacatatatgaggcacgggagaaacatctacaactaatcaaatcgagacacgagatgggatgcatgatgacagtgcgca tgatcaacacggcaggtgaaattatctgggtcaacattgttatgcacgtacgacagggactattggctaatagcgatgat ccggttatcttgtgcatcaaccaagtggttagtgaagaggaagcttatcaatttaaaatacaaggccagttatttgccct atatgcatccagaacgccagatttcttctttggatctgccttctgtacgcctattccaccaggcatggatgccaacctga tgacatctcagacgtccgccatgatccctcagccattctttccgcgccatttcgactcgtcacagtttggatcccaaact gcgtcacatttcattcagaatcaaacatcaccagttcagccaggcctgttaaagggtggatttgagggaaggcaaggaca cacagacacactaaaggctttgaaacgtaagcttcaagaaaacttcacccagaccacttgtaaacccatgaaaatcccca gagtcatgcaaaataacaatgggagatcgggatactcgccagtacaagagagcacaccactgccatcatcatttgaaaca aacagctaccgaaatgttatgaattctatgattggaggaatggaccaccatgtgatctcaagtggaccaatgaaagttat gcaagctcacagtattgcagcagcattgtcgcccaaggacaaatcgtacttatgcgatacattgcctgcatatgtaccag cacctgtgaacatggaaagaactgtaaaagtgctagagcaggttgtacccgacgtcactattcctgcttgctaccccaca ccggaaccgtctccagtggcgtcaccggaaccatcaaaacaaaaggaaagcacacacagcgtgcatgcagatatcaaact agatccagtgctagtcgccaaacatctgtgtgctatcaaacagaaacaatttcactccaaagagatggatgttcaaccga agaagctattaccaagcttagatgtcacatttgtagattctttcttcgacgaaatcaacaacatctcactttcccgagag gacgaaatcagactcctgcagtcttgttgtgaagaaactgtagcggtgaagaaagagcccattgatgattgtgttaaccc accgccgatgattcagccaaactttgacttggaggagttcctattgacatctcgtaacattgatagcaagcgtgaaagag ggatggggataaaactggagaagccgacggatgatcagcaggttctgtcattcgacagtcatccaagtccaaccccatct tcaccattcagctctactgatgacaagatgacatgcgaagattttccgagttttgccttgacgccagaatcaaacttcga cagtgatccgtacgaagacgtccttggtacggaatgctgggatttagaatccgtaactgtggacatcaccatgccaactc tgacaaaacagacgacaagcatgcacagtgcggcatcacccgctgacaacgagttgcatcaactcaaacaacttctgtca tcatggacaccgaatggtgtttccaattctcttgaagactcgcagtaa |
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Protein
| Protein ID | pfu_aug2.0_2368.1_28779.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2368.1_28779.t1 MAPSPVEDISLLDLERSNKGASKQRRDQINNEIGTMRDLLPLPESSRQRLSQLQIMSLSCVFIRKCNILQKLFSSPLPPP TDPPCDFSQSLTGFILVTTRDGKLVYISENVTEYLGHSMVDMKTQGDSLFDIVDKRDHSTVRAQLLQGGSDVDPDLQVSF FCRMNMSRTLKRQAGFGDVKVMHVKGHFADVPGQEPGSEQQVFMALCTPLITPDVKESLIQNNTMVFKSVHKLDMNFIEV TQNGEYHLGKTSEELTSQSWYSFLHPEDIYEAREKHLQLIKSRHEMGCMMTVRMINTAGEIIWVNIVMHVRQGLLANSDD PVILCINQVVSEEEAYQFKIQGQLFALYASRTPDFFFGSAFCTPIPPGMDANLMTSQTSAMIPQPFFPRHFDSSQFGSQT ASHFIQNQTSPVQPGLLKGGFEGRQGHTDTLKALKRKLQENFTQTTCKPMKIPRVMQNNNGRSGYSPVQESTPLPSSFET NSYRNVMNSMIGGMDHHVISSGPMKVMQAHSIAAALSPKDKSYLCDTLPAYVPAPVNMERTVKVLEQVVPDVTIPACYPT PEPSPVASPEPSKQKESTHSVHADIKLDPVLVAKHLCAIKQKQFHSKEMDVQPKKLLPSLDVTFVDSFFDEINNISLSRE DEIRLLQSCCEETVAVKKEPIDDCVNPPPMIQPNFDLEEFLLTSRNIDSKRERGMGIKLEKPTDDQQVLSFDSHPSPTPS SPFSSTDDKMTCEDFPSFALTPESNFDSDPYEDVLGTECWDLESVTVDITMPTLTKQTTSMHSAASPADNELHQLKQLLS SWTPNGVSNSLEDSQ |
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