Gene
| Gene Model ID | pfu_aug2.0_237.1_23719 |
|---|---|
| Locus | scaffold237.1 : 88876 ... 90699 : + |
| To GenomeBrowser | scaffold237.1:88876..90699 |
| Genes list of scaffold | scaffold237.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sodium calcium exchanger 3 | GO:0005432 GO:0006816 GO:0007154 GO:0016021 GO:0035725 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_237.1_23719.t1 | 1 | 1 | Na_Ca_ex | 92 | 249 | 2.5e-32 | 111.4 | 7.1e-36 | 3.5e-32 | 110.9 |
| pfu_aug2.0_237.1_23719.t1 | 3 | 1 | Calx-beta | 116 | 134 | 0.0 | 177.1 | 0.58 | 2900.0 | -1.8 |
| pfu_aug2.0_237.1_23719.t1 | 3 | 2 | Calx-beta | 391 | 488 | 0.0 | 177.1 | 3.0e-37 | 1.5e-33 | 114.7 |
| pfu_aug2.0_237.1_23719.t1 | 3 | 3 | Calx-beta | 516 | 590 | 0.0 | 177.1 | 1.3e-22 | 6.4e-19 | 67.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_237.1_23719.t1 | gi|676486197|ref|XP_009063898.1| | hypothetical protein LOTGIDRAFT_107505 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_237.1_23719.t1 | gi|524880739|ref|XP_005097029.1| | PREDICTED: sodium/calcium exchanger 3-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_237.1_23719.t1 | gi|524880737|ref|XP_005097028.1| | PREDICTED: sodium/calcium exchanger 3-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_237.1_23719.t1 | gi|390336628|ref|XP_781349.3| | 0.0 | |
| pfu_aug2.0_237.1_23719.t1 | gi|585683185|ref|XP_006812379.1| | PREDICTED: sodium/calcium exchanger 3-like isoform X2 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_237.1_23719.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23719.t1 atggagaagttgttagactttatatctggttataaaccagccgtgttcacggcaatttctttgttagtcctcgaccagtc atcatttgtgtggtcccaaacctccgtggcaccaaatacaacaatgaaacccgtagaagaaacatgcaatagaacagcat cgccctgcacaaaaggattaatcctaccactatggactcctagtggtaaccttagtgacggagacaaagccgctcgcgcc gctgtgtatttcatctctatgatatacatgttcttaggtgtctccattatagccgatcgcttcatggccgccattgaagt catcacatcaaaagagcgggaagttgtcgtaaggaagccggatggctccaaaacaacagtgaatgtacgcgtgtggaacg agacggtgtccaatttgacgctcatggctctgggctcgtcagcgcctgagattctcttgtccgttattgagatcataaag aatagttttgtcgcaggggaacttggtcctagtacaatcgtcggtagtgccgcctttaacttgtttgttatcaccgccat ttgtgtatattgtatcccagacggtgaatttcgtactatgaaacatttgagagtatttttcatgactgcctcgtggagta tatttgcttatctttggttgtattttattctagatgtaacctctcccggagaggtccgtgtttgggaatctgttgttacg tttttgttcttccctgccaccgttgtatcagcttatatcgtagacaagaaaatatttccatacaagttcttgtccaagaa atataggactagtagacagaaaggtgttgtgatctcaagcgaaggagatcaggaactagctgacggaaagccgaatcatg tggacgaagttgtcttcaaaggacttgataacgttgatgctgatgtaaaagaggttaaagaatttgaacaacatcgtaaa gaatttatggaaatccttcgagatttgcgaaagaagaacccaaatgccgacatgaggactctggaagaaatggcggaact agaggcaatcaaccgcggaccaaaaagtcgggcattctacagaatacaggctacaaggaaacttaccggaagcggaaacg taatcaagaaaaacaaaattgagagaagagcgagtctagaagacgtcaagattgacgtcaaggatgatacaacaactcga gtctttttcgaccctggacattatacggtgatggagaatgtaggaacattctacctgaccgtcagtcgtgaaggagggga tctgaacaaaaccttgtatgtagattacaagacggaagacggtacggctaacgccggctccgactatgaatatgcagaag gcactctagtcttttatcctctagagacacacaaacagtttcctgtaactattatcgacgacgagatttttgaagaggac gaacacttctacgtcagattgagcaatcttcgacttggagactcacaaggcatgtttgagagtggcaatggtacgcagca ggccaaattgtcaacccctcatgtagctactgttatgattctggatgacgattacccgggtgttttccatctgaatgaca cagaaatgtctgtaccggaagcaatcggtgaaatggaggtcaaggtaacgaggtcatctggagccagaggaactgtacgg gtcccttaccatgtagaagatggaacggccaaggcgggcagggattatgaactggttggatcagagcttgtctttgctaa tgacgaaaccgagtaa |
|
Protein
| Protein ID | pfu_aug2.0_237.1_23719.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23719.t1 MEKLLDFISGYKPAVFTAISLLVLDQSSFVWSQTSVAPNTTMKPVEETCNRTASPCTKGLILPLWTPSGNLSDGDKAARA AVYFISMIYMFLGVSIIADRFMAAIEVITSKEREVVVRKPDGSKTTVNVRVWNETVSNLTLMALGSSAPEILLSVIEIIK NSFVAGELGPSTIVGSAAFNLFVITAICVYCIPDGEFRTMKHLRVFFMTASWSIFAYLWLYFILDVTSPGEVRVWESVVT FLFFPATVVSAYIVDKKIFPYKFLSKKYRTSRQKGVVISSEGDQELADGKPNHVDEVVFKGLDNVDADVKEVKEFEQHRK EFMEILRDLRKKNPNADMRTLEEMAELEAINRGPKSRAFYRIQATRKLTGSGNVIKKNKIERRASLEDVKIDVKDDTTTR VFFDPGHYTVMENVGTFYLTVSREGGDLNKTLYVDYKTEDGTANAGSDYEYAEGTLVFYPLETHKQFPVTIIDDEIFEED EHFYVRLSNLRLGDSQGMFESGNGTQQAKLSTPHVATVMILDDDYPGVFHLNDTEMSVPEAIGEMEVKVTRSSGARGTVR VPYHVEDGTAKAGRDYELVGSELVFANDETE |
|