Gene
| Gene Model ID | pfu_aug2.0_237.1_23721 |
|---|---|
| Locus | scaffold237.1 : 143596 ... 161083 : + |
| To GenomeBrowser | scaffold237.1:143596..161083 |
| Genes list of scaffold | scaffold237.1 |
| Synonym | pfu_aug1.0_209.1_14907 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_237.1_23721.t1 | 1 | 1 | Clathrin_bdg | 623 | 688 | 2.5e-11 | 42.9 | 4.8e-15 | 7.2e-11 | 41.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_237.1_23721.t1 | gi|557324708|ref|XP_006035382.1| | PREDICTED: aftiphilin isoform X1 [Alligator sinensis] | 2.0e-27 |
| pfu_aug2.0_237.1_23721.t1 | gi|524990124|ref|XP_005042949.1| | PREDICTED: aftiphilin isoform X1 [Ficedula albicollis] | 9.0e-27 |
| pfu_aug2.0_237.1_23721.t1 | gi|557324710|ref|XP_006035383.1| | PREDICTED: aftiphilin isoform X2 [Alligator sinensis] | 2.0e-26 |
| pfu_aug2.0_237.1_23721.t1 | gi|564251851|ref|XP_006264968.1| | PREDICTED: aftiphilin isoform X1 [Alligator mississippiensis] | 3.0e-26 |
| pfu_aug2.0_237.1_23721.t1 | gi|524990126|ref|XP_005042950.1| | PREDICTED: aftiphilin isoform X2 [Ficedula albicollis] | 8.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_237.1_23721.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23721.t1 atggaagacaaaagtatacctcagtttgcagactttggaaaattcagctcagagttagattcaggaaaaacaaatgaaaa ccatatctgtgtggtggaaaaccatgagtcaaattataatggtagtaatcatttgactaatagtgactctggtacttatt tagattcacctttgtctgattccgaagttaacattcagggaaacattaactcagattgtgtacaaagtcctggtaatata ttgaatcagagttctactatagactcgggattaagtgtgacagatgtgacaatatctcctacagccaaatcagaagattt tcaaggatctgaaaaaagtgagagaagcgaaaagatagataaaatggtagaagaccttgataatgttcagtcagatattg tagaagagtgtgaagattttaaagaatttcagtcatctgtcattcgaaatgaagatctcgaaaatacagccagtgtttgt aatgagtccaattatgtcatatcatctcagcaaggtgacctcagtcatcacgagaatgaggcagctaattctgtgtctaa tggtcctactagtcagatacaggacggtgaagaaagcaaacattttaattcagatagtgacaaaaatgatgaaaattgtt accatggtgctgaacttgattcacaaagtgaaagtccagatcaagttagtacagacatagagagtaatgaagagtctcaa gtttctcaattaaattcaaatctagtctgtgataattctgtaaaccaccaaaaatctgaatactctgaaagtgatcatgt gatgtgcaatttcaaatctcaaaacagtgatttgaaagatgaagaggatgctgggaaagaaggggatgctgggaaggaag aggatgcaaggaaggaaatatcacctcaacattcagaaagtcaggtagaaattagtgaaagttcatgtgaaaatgaaagg acagagagacctgatagtgattcagaaaatgattcatgtgatgaagaaaaagaagaacaatcggtagatgaaattgcagt tcaaagtacggacactgaaactgaaagctcagcgaaaattgttgcaggagaaagccatgaagatgtgatagaggacattg gtgaaaatgtctgtagtgagaaagcagagaactcagatgatgaattcaatgattttgcagacttcagttctacaccagtc aatgaagtcaaagattattgcgaagatgattccccagataaaaaggtcacaaagttgtctgatgatgatgatttttgtga ttttgctgattttagttcacctgaaaaatcaaaagatgatacagcagcatcagattctatccagcaaaatgatacacatg aatgtgataaagatttaacaactgatgataaaggtgatgaaaatgacgatgattttgaggattttaattctgcgcctctc tcaaactatagtaataataacaacgacacatcgtcaacagataattttggagcatttgcatcaaatgataattttgcagc atttggagacggtgcttcaaatgacaaagactcagggggaggtagttgggctgcattcaacgaccaagcttcagaggatc aacttgttacaaatgctgatgacgatgatgatgatgacttcaataattttgatgattttcaagcagttcctgttaccaaa gaaccagaggttgtcaaggttgtttcagcttgcattgattcagcaatttttgcagccagcagtttctggggtgaaagacg tattcaccgtcacctttcctgcttccatggtacaggatcaaagtcagaaaatggtgtacagctaatgaatgatgacatgg tcgcagagagcacaaacactgagcttttgtggacaaggcttaagaagctagacagagggacaagtgtacttaaatggaat gatgccaaaagcaacaaaaacctcttcaccagcctcaaaatagataccagaaacatactcataagtcacaagaaatcagt gcctatatatgctgctaacctgaccctcggtgccgtgttagagccgaccaaaggtccagtcaaatccatccaatcagctg cctcagattccacccttattgacaccagtaaacctgatatcaagccagaaatacaagagtctaacaagcccagaagtaac gtaggctcaaaatcaacatcggaagttaccccagttcagtttgattggtccagtgctggtttgactaacccccttgaatc gagtaacaaaacacttgacctggattttctagtaatggcagaaacagaggctgttacaaagattggagtatccgattctg agttaatgcatggacagaagcccacccttcagcctctagagaacatactggccaatttgaaggtctccacagtaaaacga ggtcgtcagaacgagcatcttggtgaagagacaaggcggattctgaactcgttacctgacctgtcgtttatgcattccaa gagtaaccattag |
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Protein
| Protein ID | pfu_aug2.0_237.1_23721.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23721.t1 MEDKSIPQFADFGKFSSELDSGKTNENHICVVENHESNYNGSNHLTNSDSGTYLDSPLSDSEVNIQGNINSDCVQSPGNI LNQSSTIDSGLSVTDVTISPTAKSEDFQGSEKSERSEKIDKMVEDLDNVQSDIVEECEDFKEFQSSVIRNEDLENTASVC NESNYVISSQQGDLSHHENEAANSVSNGPTSQIQDGEESKHFNSDSDKNDENCYHGAELDSQSESPDQVSTDIESNEESQ VSQLNSNLVCDNSVNHQKSEYSESDHVMCNFKSQNSDLKDEEDAGKEGDAGKEEDARKEISPQHSESQVEISESSCENER TERPDSDSENDSCDEEKEEQSVDEIAVQSTDTETESSAKIVAGESHEDVIEDIGENVCSEKAENSDDEFNDFADFSSTPV NEVKDYCEDDSPDKKVTKLSDDDDFCDFADFSSPEKSKDDTAASDSIQQNDTHECDKDLTTDDKGDENDDDFEDFNSAPL SNYSNNNNDTSSTDNFGAFASNDNFAAFGDGASNDKDSGGGSWAAFNDQASEDQLVTNADDDDDDDFNNFDDFQAVPVTK EPEVVKVVSACIDSAIFAASSFWGERRIHRHLSCFHGTGSKSENGVQLMNDDMVAESTNTELLWTRLKKLDRGTSVLKWN DAKSNKNLFTSLKIDTRNILISHKKSVPIYAANLTLGAVLEPTKGPVKSIQSAASDSTLIDTSKPDIKPEIQESNKPRSN VGSKSTSEVTPVQFDWSSAGLTNPLESSNKTLDLDFLVMAETEAVTKIGVSDSELMHGQKPTLQPLENILANLKVSTVKR GRQNEHLGEETRRILNSLPDLSFMHSKSNH |
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