Gene
| Gene Model ID | pfu_aug2.0_237.1_23732 |
|---|---|
| Locus | scaffold237.1 : 389608 ... 405515 : - |
| To GenomeBrowser | scaffold237.1:389608..405515 |
| Genes list of scaffold | scaffold237.1 |
| Synonym | pfu_aug1.0_59.1_43448 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_237.1_23732.t1 | 2 | 1 | AAA_33 | 161 | 185 | 6.0e-22 | 78.0 | 0.27 | 570.0 | 0.3 |
| pfu_aug2.0_237.1_23732.t1 | 1 | 1 | SPRY | 231 | 361 | 2.1e-13 | 50.4 | 2.4e-16 | 5.1e-13 | 49.1 |
| pfu_aug2.0_237.1_23732.t1 | 2 | 2 | AAA_33 | 400 | 549 | 6.0e-22 | 78.0 | 2.6e-24 | 5.5e-21 | 74.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_237.1_23732.t1 | gi|524872186|ref|XP_005092857.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_237.1_23732.t1 | gi|326668186|ref|XP_003198760.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Danio rerio] | 0.0 |
| pfu_aug2.0_237.1_23732.t1 | gi|291190809|ref|NP_001167405.1| | Heterogeneous nuclear ribonucleoprotein U-like protein 1 [Salmo salar] | 0.0 |
| pfu_aug2.0_237.1_23732.t1 | gi|573878735|ref|XP_006627593.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_237.1_23732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23732.t1 caaatgaatcaatatccagctcagccgatgattctcaagaagcctctatgttagatgatagtagtcaagaagcaaacgag tctcaggaagtacaagaacctgttgatgaagaaaaagttgagcccactgaagctgaaccagatattgaggaaaagtctgc cccagttgatgatgttaagcctgagcctgaggaagtgaaacaaagtgatgatactccagtaaaatcagaggaggctgctc aggagtcggacgtaaagaaggaggaagaggctccccaggatgacgagatgaaggaggaggtcaaagaagaagaacaagaa cccaaaggaaatggtgatgtggccgctgatgactcggacatggtggctgtagatgtcgctgatgatgatggacatgaaaa gcgacatggcaggaaaaggtcaagatccaggtcacatgaaagaaaacatagcagatctaggtcaagggaaagaaggaggt caaggtcacgggaaagaaggagaagtcccacaccaaagaaaatcgagatggaggatgaagcttgggaaacctcagaaagt gtctgtctagacagattcaactccgacttaacattagcgatagatgagacaaacttagcagccacaccaatgacagaagg aggatttgccatgatgtgggctggagtcagaggctcgtatggagtcaaaaaaggaaaagtagcttttgaagtcaggctgt tggagaattgtgatgttcaccatcttcctgcggacgaggttcatcagaatgtggccagggtgggctggtcctgtaactct acctcattacagcttggtgaagaagcaaaatcgtttggatatggtggaacggctaaggcagctacagaatgtaaatttga agattacggccaggtctttggtgcaggagatgtcattacttcttatgtagattttgagatggatgagaacgaggtataca tatcgtttgccaagaacggagatgatttaggtatctgcttccctatagagaaatccaaactagatggagaggcattgttc cctcatatcctcacaaaaaatatatcgttcgatgttaactttggatcatgggaggagccatacttcccactcaaagatga ttttgtatggatagagaaggttccagtagaggacagagaaagaggcacagctcctcccgccaagaaagaggagtgtgaga tgatgatgatggttggattaccaggggctggaaagacaacttggtcggaaaaacacaaggcttccaatcctgataaaatg ttctacattttaggaactaatcttattattgacaaaatgaaggtgatgggactacccaggaagaagaactatgctggtag atgggatgtccttatagacaaggccaccaagtgcctaaataaattactggagacggcggctagcaagaaaagaaattata tcctggatcagtactgtatagataggggcttaaggagggatgtagggagacgtaaaatgcagccttttgaaggttttcaa cgcaaggcagttgtcattgtaccaagtgatgaagaatttcaaaagcgcgttgaaaacagagaaaaagaggaaggaaagga ggttcctgaacgtgctgtacttgaaatgaaagctaactttacattacctgaggagggccctctgtttgactctatagaat ttgtggaattggccaaggaggaggcaacagagctgatagagaaatataataaggaaggaaaggacaacctacccccaccg gagaaaaggtcaagatggggaggtcaggacaacagacgggacagccgtaatgacagaaggagtaatgatggatatgaccg tagaagtggtggctggaaccagcgagataacagacatggtggtggtggcggcggtggcagatacgggggtggtggtgaca gaagaggaggtggtggaggtaaagatggggtgaccgcagtggaggcggtggcaatagatggggtggtggcggcggcggtg gtggtagagatagatatgatagaagtggtggtggcggtaaccgctggggaggcggtggtagcggcggtggtggtagtaga tggggaggtggtggaggaggaggcagacagggaaatgatcgtagacaaggaggaggtggtggatggaatcaaggaggtag aaatgatcgtaggagtggaggaggtggaggcagcagtggtcgttggagtgataaccgtagtggtggtagcggcggtggtg gtaaatggtcgagcggcggtagcagtggtggtggtggtggtaacaggtcgttggggagtggacagaccagccagtatggc tcacagggatcgtggggcgatcagagtggctggggatctcaacaaaactgggggtctcagcagggaagctggggaaacca gggaaactggaataatcagaattaccagaattggggttatggtactagtggccagtctaataatcagcagtcctggaacc aatcctatcaacagtggccgcagcaatacactactaaccaacagtaccaacaatggtatgggtcctacaaccaatcctcc actcaaccgcagcagtctcagcagaaataaacacggcagcttaaatctactgtatatgacatgccaatctataaatatat tgacctga |
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Protein
| Protein ID | pfu_aug2.0_237.1_23732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_237.1_23732.t1 NESISSSADDSQEASMLDDSSQEANESQEVQEPVDEEKVEPTEAEPDIEEKSAPVDDVKPEPEEVKQSDDTPVKSEEAAQ ESDVKKEEEAPQDDEMKEEVKEEEQEPKGNGDVAADDSDMVAVDVADDDGHEKRHGRKRSRSRSHERKHSRSRSRERRRS RSRERRRSPTPKKIEMEDEAWETSESVCLDRFNSDLTLAIDETNLAATPMTEGGFAMMWAGVRGSYGVKKGKVAFEVRLL ENCDVHHLPADEVHQNVARVGWSCNSTSLQLGEEAKSFGYGGTAKAATECKFEDYGQVFGAGDVITSYVDFEMDENEVYI SFAKNGDDLGICFPIEKSKLDGEALFPHILTKNISFDVNFGSWEEPYFPLKDDFVWIEKVPVEDRERGTAPPAKKEECEM MMMVGLPGAGKTTWSEKHKASNPDKMFYILGTNLIIDKMKVMGLPRKKNYAGRWDVLIDKATKCLNKLLETAASKKRNYI LDQYCIDRGLRRDVGRRKMQPFEGFQRKAVVIVPSDEEFQKRVENREKEEGKEVPERAVLEMKANFTLPEEGPLFDSIEF VELAKEEATELIEKYNKEGKDNLPPPEKRSRWGGQDNRRDSRNDRRSNDGYDRRSGGWNQRDNRHGGGGGGGRYGGGGDR RGGGGGKDGVTAVEAVAIDGVVAAAVVVEIDMIEVVVAVTAGEAVVAAVVVVDGEVVEEEADREMIVDKEEVVDGIKEVE MIVGVEEVEAAVVVGVITVVVVAAVVVNGRAAVAVVVVVVTGRWGVDRPASMAHRDRGAIRVAGDLNKTGGLSREAGETR ETGIIRITRIGVMVLVASLIISSPGTNPINSGRSNTLLTNSTNNGMGPTTNPPLNRSSLSRNKHGSLNLLYMTCQSINIL T |
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