Gene
| Gene Model ID | pfu_aug2.0_238.1_27088 |
|---|---|
| Locus | scaffold238.1 : 183730 ... 241379 : + |
| To GenomeBrowser | scaffold238.1:183730..241379 |
| Genes list of scaffold | scaffold238.1 |
| Synonym | pfu_aug1.0_755.1_07661 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_238.1_27088.t1 | 1 | 1 | PDZ | 123 | 195 | 2.3e-09 | 37.2 | 2.4e-12 | 6.0e-09 | 35.9 |
| pfu_aug2.0_238.1_27088.t1 | 2 | 1 | RA | 256 | 307 | 6.8e-07 | 29.6 | 1.0e-09 | 2.5e-06 | 27.8 |
| pfu_aug2.0_238.1_27088.t1 | 2 | 1 | FERM_M | 323 | 436 | 9.7e-13 | 48.4 | 5.4e-16 | 1.3e-12 | 47.9 |
| pfu_aug2.0_238.1_27088.t1 | 2 | 2 | RA | 465 | 485 | 6.8e-07 | 29.6 | 3.4 | 8400.0 | -2.7 |
| pfu_aug2.0_238.1_27088.t1 | 2 | 2 | FERM_M | 1103 | 1103 | 9.7e-13 | 48.4 | 1.3 | 3200.0 | -1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_238.1_27088.t1 | gi|242020330|ref|XP_002430608.1| | conserved hypothetical protein [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_238.1_27088.t1 | gi|642937831|ref|XP_008200319.1| | PREDICTED: FERM and PDZ domain-containing protein 4 isoform X2 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_238.1_27088.t1 | gi|189241815|ref|XP_971376.2| | PREDICTED: FERM and PDZ domain-containing protein 4 isoform X1 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_238.1_27088.t1 | gi|637281980|ref|XP_008105425.1| | PREDICTED: FERM and PDZ domain-containing protein 4 isoform X3 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_238.1_27088.t1 | gi|119619210|gb|EAW98804.1| | FERM and PDZ domain containing 4 [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_238.1_27088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27088.t1 atgttcttaattcggaatcataatgagatgaagccgagggaagatgtgaatcatgttttagtattcgttattggagagtt tataaatcgtacatgtgggtcaacataccgcttttgcatcattcctccagaagaagtcaactactactttgcatcgttac cccggaaccatgagagtcagcggtcgtcatggttaccaccaacagagaattgggacccggggccaatggccttgccctat ggttgggaatgtggtgtggacaaaaagaacaacagaccatatttcataaatcacatagagcggtttaccagtcaggacga ccctcgggatgatccagattatgtggagccgcccaaaccccgggagatagagctgacaagggacccacagaaagggtttg gctttgtggcggggagcgagaaacctgtagtcgttagatttgttacagatggtggccctagtgtagatagactactccct ggtgaccaaattattaaaataaacggtgaagatgtcaaaaaggctccaagagaatatgtcatagatctagtcaggtcctg taagcagaccattacccttactgtgtgtcaaccttattcagataattccacaaagaagtcatcattgctaacagctgcca agaaagctcgcctaaagaacaatccaaaccgagtccggtttgccgagaacgtaaccgttacaatggtcaatggagcccca ttacaaagtccctcgacacatgagagttatgtgcctttcatgccaaatgtcctcaaggttttcttggagaacggacaaac taagtccttcaaatacgacaacaaaactaccgttaaagatgtggtacagtcattagtagagaaacttaatatacattgtg ttaaacacttcaacttggtgctacaaaatacgaaaagttcccagcctggacgaatgacattattacaggaacaggaaaca cttgctgagtgttgtaacgacatagttcaagaaagatttcctgagctgaagggtgataccattttcaaattagctgcttt acatatacagcaacatgccattagtaacaacaattcatctaaagtcaaccttaaagcaatacaaaaagactgtggattgg agaaatttctacccgaatcaattttagaaaatatgaaaattaaggatgtccgaaagatgttgacccatcagctgaaggtc aatcagaatttgacccctcctggacagaagaatctctcctctctacaggccaaactacactatatgaagatcgttagcga gctcaaaaccttcggaagtcgggtcttcatggtcacaatgctggacaaaaaggcagaagctatggtccttgtaggtccta agtctggtataggcctcattaccaacattaaacaatatacaatttccgttatggctgaatttgaccaaattacaagtgtc aaggtcactaaggaaaaagacaatatgcaaaaagttgaaattatagtggataagaatgatggggatgaagcaaccttaaa ctttggcctcttaaaagacgatgcgatgaactttgtcggaatgattgaaggctattacaagatttttgtggacgcagata aaatcttggtggaaaaaccggcaagcaagcagagtgctgacccagatgttcctccatatctgggtaagcatcgtgtaatc gtcgctccctggtcctaccctgaggatattgtttccacggtgatacagagccccctagagagtgaggaggaggaggtgtt agagaacgagagaattgtcaacctctgtgccggacctccgagctacgacggtaacagcggagaatacatagccagaatta aacatgaccttggtataaagtctgacattgaaggtgaaaaagatgacgactcagttgaaaccataacatcactaacaaac ttacacactgatgaaaaaagtgttaacgatgtcgcgccaccacaaaaaagcataatagtaataggctctccaaaaatgac aagcgatagtgttaacaagattccatctaaacgttcaggggactcagatttggatggcattgatcgtaaaacaccccgta gggaaaatggtgaaattgtgacggataattatacagaacgtgaaactgaaaaatacatggaagactttaaggaggtaatc gttaataaatctgaggaattatcggacactgacagtggtgttgaatcagaacggaaaattccattggaggatttggcacc agggtcaaaagactcagaaagttttggattacatagtcctgatcagcttcctagaacagagtcggattttgaggtcatag cgtcgagttttggattactgagtcccgaaaaaatccctccagaggttgaggagggcatcctagatccgaggatgttctca gagaggaggctgtacatagatcccgatattatagatctgaccttgatgccacctcccccaccccatgatccaccaatgtt aaatgcctcaccctcatggcaccctgaagtacagcacacttccagtctccctactgctccagctgccagacatgacaatg gggcatcggcccatcctcctccatttgacagatctgccagtgtcggagataatcctgatttctttgactcggacattgat gaactaatcgccaagcttaccattccccctccccctggggataatgtcgacacctttgatagttctatacctttgtctca aacatggagtggtccattaaacaatgacgacataaattcagggttggacgactcgcttacctcacttactgacttagata aaactgttgatgatatttttgcctcgttaattattcccccacccccaggggaagcttcagaggaaaggacttcttcatta cgactcaacaaagcttcctctctagagctagcacctgtaccctgtgacttaaaagatgcgacacaaaaaacgggaccatt ccgtgcaaaggcagcatctttcgataacattcttgacactaaatcggaagataaggaaaatattgaacacaaaagaaagg aggaagaatctaaagtaggatcaaaatactcgagacatttacgtagaacaaactcgttcgacttcacacagcataattta gtgaaagaggatcctgaagtgaaacaagttacagaatcattttctgcacttaaatctaaacttcagtcctacagagattt tctacttaaaaagtcaaatagtaccaaaaaggaacgcaacactgaacggacctcttatgacaggagtaaaatttcagaat ctcttcaagctcttaagagtaggaaagaaaagaagtctagttcgcagaagaaaaaacaatccggtgagagtgcggacaag gagaagagaactcctgccttactcaatacgcttgccacaactcgtacttttagaccgccatcttcatcttccacacagaa agttggcgggaaaaagtcgggaccaatgagagcgctctcaaacgtgttgtcttcctctgaaggaaatctattggacgact cgccgaaaagggtgcgcgcaccaatttcaaacggaccaatcaaacctgttcacggagaaacaaaaactgacacaaacact gatgaaagccctaaaaggagatcaagtataacctctggggaggagacacatgatcgtagttttacctctaaagacgatat ctctttgacaaattccgagaaatccaaaaagaaggaaaatccattcggaaccgttaacaatatgtggcgaccgatttcta tgtcaaaaagtagctcaatacgaaaagacgacaccgaggaatcttatagagtgtacaataactttgatgctttaagagac atatctgccggtaaagcccctcccgtgcgggaagtgaaagtccctgttataacaaaaaagacaaagagtgcgcctctacc gagtgaaagtgtacagaagaaaaacggttcgatttcgggtgtaagttttgccgtacttaaagacaagattcacgaaagtc actcagactgtgtcaaagaaattcttcaaaaagagtataaagtcgatagtttcgcaagtgcaaccaaagattccgacaga cttcttgccgaacttaagcatacgatggaaactctcaaggattcccgaatagacaggcagtcaagtcagtttggaatgtg caaagacgaattaaccaatcaggttatggcaaccatgattatgatggaggctacacaccaagctcaacatctcggttttg aagtcataaagttgaccaacgcattcaaatctaccataaatgccgcccaagcagcggtagggaaacccctaggcgatccc catatgaaatatctgatgagacaagccacaaatctagcccaactcatcagcagtttattaaaatctttgaaaactttaca acaaaaatga |
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Protein
| Protein ID | pfu_aug2.0_238.1_27088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27088.t1 MFLIRNHNEMKPREDVNHVLVFVIGEFINRTCGSTYRFCIIPPEEVNYYFASLPRNHESQRSSWLPPTENWDPGPMALPY GWECGVDKKNNRPYFINHIERFTSQDDPRDDPDYVEPPKPREIELTRDPQKGFGFVAGSEKPVVVRFVTDGGPSVDRLLP GDQIIKINGEDVKKAPREYVIDLVRSCKQTITLTVCQPYSDNSTKKSSLLTAAKKARLKNNPNRVRFAENVTVTMVNGAP LQSPSTHESYVPFMPNVLKVFLENGQTKSFKYDNKTTVKDVVQSLVEKLNIHCVKHFNLVLQNTKSSQPGRMTLLQEQET LAECCNDIVQERFPELKGDTIFKLAALHIQQHAISNNNSSKVNLKAIQKDCGLEKFLPESILENMKIKDVRKMLTHQLKV NQNLTPPGQKNLSSLQAKLHYMKIVSELKTFGSRVFMVTMLDKKAEAMVLVGPKSGIGLITNIKQYTISVMAEFDQITSV KVTKEKDNMQKVEIIVDKNDGDEATLNFGLLKDDAMNFVGMIEGYYKIFVDADKILVEKPASKQSADPDVPPYLGKHRVI VAPWSYPEDIVSTVIQSPLESEEEEVLENERIVNLCAGPPSYDGNSGEYIARIKHDLGIKSDIEGEKDDDSVETITSLTN LHTDEKSVNDVAPPQKSIIVIGSPKMTSDSVNKIPSKRSGDSDLDGIDRKTPRRENGEIVTDNYTERETEKYMEDFKEVI VNKSEELSDTDSGVESERKIPLEDLAPGSKDSESFGLHSPDQLPRTESDFEVIASSFGLLSPEKIPPEVEEGILDPRMFS ERRLYIDPDIIDLTLMPPPPPHDPPMLNASPSWHPEVQHTSSLPTAPAARHDNGASAHPPPFDRSASVGDNPDFFDSDID ELIAKLTIPPPPGDNVDTFDSSIPLSQTWSGPLNNDDINSGLDDSLTSLTDLDKTVDDIFASLIIPPPPGEASEERTSSL RLNKASSLELAPVPCDLKDATQKTGPFRAKAASFDNILDTKSEDKENIEHKRKEEESKVGSKYSRHLRRTNSFDFTQHNL VKEDPEVKQVTESFSALKSKLQSYRDFLLKKSNSTKKERNTERTSYDRSKISESLQALKSRKEKKSSSQKKKQSGESADK EKRTPALLNTLATTRTFRPPSSSSTQKVGGKKSGPMRALSNVLSSSEGNLLDDSPKRVRAPISNGPIKPVHGETKTDTNT DESPKRRSSITSGEETHDRSFTSKDDISLTNSEKSKKKENPFGTVNNMWRPISMSKSSSIRKDDTEESYRVYNNFDALRD ISAGKAPPVREVKVPVITKKTKSAPLPSESVQKKNGSISGVSFAVLKDKIHESHSDCVKEILQKEYKVDSFASATKDSDR LLAELKHTMETLKDSRIDRQSSQFGMCKDELTNQVMATMIMMEATHQAQHLGFEVIKLTNAFKSTINAAQAAVGKPLGDP HMKYLMRQATNLAQLISSLLKSLKTLQQK |
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