Gene
| Gene Model ID | pfu_aug2.0_238.1_27093 |
|---|---|
| Locus | scaffold238.1 : 290087 ... 313879 : - |
| To GenomeBrowser | scaffold238.1:290087..313879 |
| Genes list of scaffold | scaffold238.1 |
| Synonym | pfu_aug1.0_4868.1_16539 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_238.1_27093.t1 | 9 | 1 | zf-H2C2_2 | 80 | 85 | 7.4e-18 | 63.8 | 7.0 | 15000.0 | -3.5 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 1 | zf-C2H2 | 80 | 85 | 9.8e-13 | 47.6 | 1.0 | 2200.0 | -0.7 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 2 | zf-C2H2 | 176 | 180 | 9.8e-13 | 47.6 | 7.0 | 15000.0 | -3.9 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 3 | zf-C2H2 | 201 | 224 | 9.8e-13 | 47.6 | 0.003 | 6.4 | 7.3 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 2 | zf-H2C2_2 | 216 | 252 | 7.4e-18 | 63.8 | 0.0098 | 21.0 | 5.6 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 4 | zf-C2H2 | 243 | 264 | 9.8e-13 | 47.6 | 2.3e-05 | 0.049 | 13.9 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 3 | zf-H2C2_2 | 258 | 264 | 7.4e-18 | 63.8 | 7.0 | 15000.0 | -3.5 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 4 | zf-H2C2_2 | 358 | 365 | 7.4e-18 | 63.8 | 1.3 | 2700.0 | -1.1 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 5 | zf-C2H2 | 358 | 364 | 9.8e-13 | 47.6 | 1.7 | 3500.0 | -1.3 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 5 | zf-H2C2_2 | 415 | 437 | 7.4e-18 | 63.8 | 0.21 | 450.0 | 1.4 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 6 | zf-C2H2 | 442 | 452 | 9.8e-13 | 47.6 | 0.01 | 22.0 | 5.6 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 6 | zf-H2C2_2 | 444 | 461 | 7.4e-18 | 63.8 | 1.8e-06 | 0.0038 | 17.4 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 7 | zf-C2H2 | 459 | 477 | 9.8e-13 | 47.6 | 2.9e-05 | 0.062 | 13.6 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 7 | zf-H2C2_2 | 470 | 492 | 7.4e-18 | 63.8 | 1.3e-11 | 2.7e-08 | 33.6 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 8 | zf-C2H2 | 483 | 505 | 9.8e-13 | 47.6 | 3.9e-08 | 8.3e-05 | 22.7 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 8 | zf-H2C2_2 | 497 | 521 | 7.4e-18 | 63.8 | 4.7e-12 | 9.9e-09 | 35.0 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 9 | zf-C2H2 | 511 | 533 | 9.8e-13 | 47.6 | 1.0e-07 | 0.00022 | 21.4 |
| pfu_aug2.0_238.1_27093.t1 | 9 | 9 | zf-H2C2_2 | 525 | 535 | 7.4e-18 | 63.8 | 0.044 | 93.0 | 3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_238.1_27093.t1 | gi|260798254|ref|XP_002594115.1| | hypothetical protein BRAFLDRAFT_57385 [Branchiostoma floridae] | 1.0e-30 |
| pfu_aug2.0_238.1_27093.t1 | gi|260805216|ref|XP_002597483.1| | hypothetical protein BRAFLDRAFT_223059 [Branchiostoma floridae] | 2.0e-30 |
| pfu_aug2.0_238.1_27093.t1 | gi|260795677|ref|XP_002592831.1| | hypothetical protein BRAFLDRAFT_65416 [Branchiostoma floridae] | 4.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_238.1_27093.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27093.t1 atgcaattgtataggaggaaagtaattccattcagtgtacctcgcaaaacaacgggaaagaaaaaaagtgccactcaatc tgttattagggaagagatagcctgtcttaataggacaaaagcaacaggtgagagcacattgacagaggcaaagcactcgc acagatatccccttagagagctacctcagcagaattacatggacctagaagcaccaaatgatgacgatttcatcttttgt gaagattgtaacagggaacatgaaggtgactgtcctctacatggaccatatgttattgttaatgatactatggttccagc agattgtttagataatgagcgacctcttcaaagccttccggcaggattagttgtgagatcatcaggtatacccaatgctg gactaggtgtatgggctatagataccattcctgttagaacaaggtttggtccttacctaggagatattacacaagatgct gatgaggctcactcgacagggtattcttggcaggcatatgcattatgtagagattgtacaagtttaaagttcttgagaga agtcgaagtcataagatcagaatttgatatcagagagatgtatcgatgtccgtggtgcacaatcagtttagggactctag atttcttaagtaaacactgcaaattcaaacatggccagttagtaggcacagatcctaacaagaagaaatatgaaggggat gatatttacaagtgtggaaaatgtgatgtgtgctattcttacattgattacttggtgtcccacatgaagaaagtattgat taaatatgttttaaaaaatcatgtctttgtatttgtagtgtttaaaaaaaaagtaggatccatggaagagagaatgcaag tgacttttgatatgttagatagagaccatgatgctgagagtccaatcccaatttatttttctcaaaagaaaagggtatgt ttgagggcaaaagatattgtcccagctaaaaaaaacaagaaaaaagaaagcagaaacgagatatataggagcaataaaca tatattttcttctacactaaaagaaactcaaaaaaaacacttgaagattcacagagaccttttcaaattagatatttgca ggtttgatacttcttccttaacagatcttgatggttatctacaagaaagtttgattggaaaggtaatgaaaaaggagaac aatggacatgatattgttgagtatgacttgagtagtccgagtcatatcaaggacaatcaaacaaagatgacacattcagg gcatgcttacgagtgtgacaaggctgggtatggtgctgcttatctcagtcatctcgtgacacatcagaggacacacacag gagaaaagccttgtaagtgtgggtatagtactgctcagcttagttatctcaagacacatcagaggacacacacaggagag aagccttataagtgtgatgagtgtgggtatagtactgctgatcttggtaatctcaagaaacatcagaggacacacatagg agagaagccttataagtgtgatgagtgtgggtatagtactgctcagcttggtgatctcaagaaacatcagaggacacaca ggagagaagccttataa |
|
Protein
| Protein ID | pfu_aug2.0_238.1_27093.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27093.t1 MQLYRRKVIPFSVPRKTTGKKKSATQSVIREEIACLNRTKATGESTLTEAKHSHRYPLRELPQQNYMDLEAPNDDDFIFC EDCNREHEGDCPLHGPYVIVNDTMVPADCLDNERPLQSLPAGLVVRSSGIPNAGLGVWAIDTIPVRTRFGPYLGDITQDA DEAHSTGYSWQAYALCRDCTSLKFLREVEVIRSEFDIREMYRCPWCTISLGTLDFLSKHCKFKHGQLVGTDPNKKKYEGD DIYKCGKCDVCYSYIDYLVSHMKKVLIKYVLKNHVFVFVVFKKKVGSMEERMQVTFDMLDRDHDAESPIPIYFSQKKRVC LRAKDIVPAKKNKKKESRNEIYRSNKHIFSSTLKETQKKHLKIHRDLFKLDICRFDTSSLTDLDGYLQESLIGKVMKKEN NGHDIVEYDLSSPSHIKDNQTKMTHSGHAYECDKAGYGAAYLSHLVTHQRTHTGEKPCKCGYSTAQLSYLKTHQRTHTGE KPYKCDECGYSTADLGNLKKHQRTHIGEKPYKCDECGYSTAQLGDLKKHQRTHRREAL |
|