Gene
| Gene Model ID | pfu_aug2.0_238.1_27095 |
|---|---|
| Locus | scaffold238.1 : 357800 ... 362399 : + |
| To GenomeBrowser | scaffold238.1:357800..362399 |
| Genes list of scaffold | scaffold238.1 |
| Synonym | pfu_aug1.0_22695.1_33282 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_238.1_27095.t1 | 2 | 1 | RNase_PH | 63 | 198 | 2.9e-25 | 89.0 | 7.4e-29 | 5.5e-25 | 88.2 |
| pfu_aug2.0_238.1_27095.t1 | 1 | 1 | RNase_PH_C | 225 | 286 | 3.0e-08 | 33.4 | 8.1e-12 | 6.0e-08 | 32.5 |
| pfu_aug2.0_238.1_27095.t1 | 2 | 2 | RNase_PH | 285 | 303 | 2.9e-25 | 89.0 | 1.3 | 9700.0 | -3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_238.1_27095.t1 | gi|676443852|ref|XP_009050238.1| | hypothetical protein LOTGIDRAFT_201434, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_238.1_27095.t1 | gi|514741035|ref|XP_005018404.1| | PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP43 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_238.1_27095.t1 | gi|705702424|ref|XP_010126385.1| | PREDICTED: exosome complex component RRP43 [Chlamydotis macqueenii] | 0.0 |
| pfu_aug2.0_238.1_27095.t1 | gi|363729290|ref|XP_003640625.1| | PREDICTED: exosome complex component RRP43 [Gallus gallus] | 0.0 |
| pfu_aug2.0_238.1_27095.t1 | gi|675613074|ref|XP_008935303.1| | PREDICTED: exosome complex component RRP43, partial [Merops nubicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_238.1_27095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27095.t1 atgcgcattcttttcaaagtaaaacggaaattagaaagtgcgacgaacgagacattttccatgcatgtgggaagaggagg tagaaaacagtttacaccaaaacaaagaatattgcagaannnncccttggagttttatgaaaagtttatccaacaagaag ttcgtccagacggaagagaacttggagagttccgcagcactgtgtgtaacctgagctgcattactacggccaatggatca gctctaataaagataggaaatacaaccatcatatgtggtataaaggcagaattagcttcccctgcttcggaagagccatg taaaggtttcatcatcccaaacctagagttatctcccatgtgttcatcaagattccgctctggaccaccaggggagcaag cacaagttgcaagtcaatttttagcagatgtaatcaaaaattccaaatgcgtagacctggagacactttgtgtggaaagt gggaaattggtgtgggttttacactgtgatctcatttgtctggattatgatgggaatataacggacgcaagtattctggc tttgatagcggcacttcagacaacaaaactacctaaagtgaaacttaacgaagatacagacaagttcgaaacatttgaat ctgacttagtttcattagcactgctgagtcatcccgtctcgacaactttttctatcctcggtgaccaaatacttatagtc gatcctacatcagaggaagaatctttgtctatgggtaccattaccatcgtagccttggtagacaaaatctgtatggtgta caaaccaggtggaaaccccgttgcatcagaacagttacctactttatttgagagagctatagaaagagggaaggaagtca gaagtcttgtggacaaaaccttttccagtgcatcttga |
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Protein
| Protein ID | pfu_aug2.0_238.1_27095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_238.1_27095.t1 MRILFKVKRKLESATNETFSMHVGRGGRKQFTPKQRILQXXPLEFYEKFIQQEVRPDGRELGEFRSTVCNLSCITTANGS ALIKIGNTTIICGIKAELASPASEEPCKGFIIPNLELSPMCSSRFRSGPPGEQAQVASQFLADVIKNSKCVDLETLCVES GKLVWVLHCDLICLDYDGNITDASILALIAALQTTKLPKVKLNEDTDKFETFESDLVSLALLSHPVSTTFSILGDQILIV DPTSEEESLSMGTITIVALVDKICMVYKPGGNPVASEQLPTLFERAIERGKEVRSLVDKTFSSAS |
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