Gene
| Gene Model ID | pfu_aug2.0_240.1_00481 |
|---|---|
| Locus | scaffold240.1 : 151159 ... 157585 : - |
| To GenomeBrowser | scaffold240.1:151159..157585 |
| Genes list of scaffold | scaffold240.1 |
| Synonym | pfu_aug1.0_3310.1_44645 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| agrin isoform x1 | GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_240.1_00481.t1 | 3 | 1 | Kazal_2 | 54 | 65 | 8.2e-10 | 38.4 | 2.0 | 15000.0 | -4.2 |
| pfu_aug2.0_240.1_00481.t1 | 2 | 1 | Kazal_1 | 60 | 60 | 2.8e-09 | 36.8 | 2.0 | 15000.0 | -8.4 |
| pfu_aug2.0_240.1_00481.t1 | 3 | 2 | Kazal_2 | 68 | 72 | 8.2e-10 | 38.4 | 1.2 | 8600.0 | -3.3 |
| pfu_aug2.0_240.1_00481.t1 | 2 | 2 | Kazal_1 | 115 | 158 | 2.8e-09 | 36.8 | 3.7e-13 | 2.8e-09 | 36.8 |
| pfu_aug2.0_240.1_00481.t1 | 3 | 3 | Kazal_2 | 121 | 158 | 8.2e-10 | 38.4 | 1.1e-13 | 8.2e-10 | 38.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_240.1_00481.t1 | gi|675879786|ref|XP_009025417.1| | hypothetical protein HELRODRAFT_163239 [Helobdella robusta] | 5.0e-11 |
| pfu_aug2.0_240.1_00481.t1 | gi|156382214|ref|XP_001632449.1| | predicted protein [Nematostella vectensis] | 7.0e-10 |
| pfu_aug2.0_240.1_00481.t1 | gi|528917165|ref|XP_005194915.1| | PREDICTED: agrin isoform X1 [Bos taurus] | 1.0e-08 |
| pfu_aug2.0_240.1_00481.t1 | gi|194674151|ref|XP_604151.4| | PREDICTED: agrin isoform X2 [Bos taurus] | 1.0e-08 |
| pfu_aug2.0_240.1_00481.t1 | gi|555953605|ref|XP_005888975.1| | PREDICTED: agrin [Bos mutus] | 1.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_240.1_00481.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_240.1_00481.t1 atggagacaaaatgtattttatcatttatatggatacctatattccttcctggtacgctgggatactccgtggacagtag cggtctacagtattacaatacaaactcggatccatgtcccaatgagtgcgatcctaagaaatgttccaaattgtcctact gtaattctaagatagaaaaagacaggtgtaattgctgtgacgtatgtgcgtccgacgtgtggtcaccggacagctataga cccccattgaagaaaggtggtgcgtgcgagcaggtcaaatgtccaaaacggaaagtatgcgtggaaaacatgcaaggact tccgttgtgcacttgtcccaatgcgttcatctgccgcggaaggaaacgccaggtttgcgggatggacggcaacacatata aatcgaagtgccatatgcgcgtcgcatcatgtgccaaaggcaaacgcataaaactcaagcacaaaggagcatgtaacact ggcatgattgccacccaacaatacggcgggaaagtgaagtatccggatggagaatacgatatccggcgcaggcgcaagaa gaaccgaaagaaggagaaacggaagcataggcgacataaatcacgacttcgtagaaagagaaaacaaaagaaaagggcat accttaggggacgcaaacaaacaagttggcgatatgggaataaagaaaaaaataaactaaataaaagaaaaaataagaag aggaatagacgcaataaacgagtactagttaaaaattag |
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Protein
| Protein ID | pfu_aug2.0_240.1_00481.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_240.1_00481.t1 METKCILSFIWIPIFLPGTLGYSVDSSGLQYYNTNSDPCPNECDPKKCSKLSYCNSKIEKDRCNCCDVCASDVWSPDSYR PPLKKGGACEQVKCPKRKVCVENMQGLPLCTCPNAFICRGRKRQVCGMDGNTYKSKCHMRVASCAKGKRIKLKHKGACNT GMIATQQYGGKVKYPDGEYDIRRRRKKNRKKEKRKHRRHKSRLRRKRKQKKRAYLRGRKQTSWRYGNKEKNKLNKRKNKK RNRRNKRVLVKN |
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