Gene
| Gene Model ID | pfu_aug2.0_240.1_00487 |
|---|---|
| Locus | scaffold240.1 : 336334 ... 352723 : + |
| To GenomeBrowser | scaffold240.1:336334..352723 |
| Genes list of scaffold | scaffold240.1 |
| Synonym | pfu_aug1.0_23844.1_54930 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_240.1_00487.t1 | 4 | 1 | HH_signal | 58 | 84 | 5.1e-10 | 39.1 | 0.56 | 8400.0 | -3.9 |
| pfu_aug2.0_240.1_00487.t1 | 4 | 2 | HH_signal | 406 | 443 | 5.1e-10 | 39.1 | 0.0017 | 25.0 | 4.4 |
| pfu_aug2.0_240.1_00487.t1 | 4 | 3 | HH_signal | 464 | 533 | 5.1e-10 | 39.1 | 1.4e-08 | 0.00021 | 20.9 |
| pfu_aug2.0_240.1_00487.t1 | 4 | 4 | HH_signal | 1099 | 1138 | 5.1e-10 | 39.1 | 7.1e-05 | 1.1 | 8.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_240.1_00487.t1 | gi|260825792|ref|XP_002607850.1| | hypothetical protein BRAFLDRAFT_117283 [Branchiostoma floridae] | 7.0e-17 |
| pfu_aug2.0_240.1_00487.t1 | gi|260809029|ref|XP_002599309.1| | hypothetical protein BRAFLDRAFT_117369 [Branchiostoma floridae] | 4.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_240.1_00487.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_240.1_00487.t1 atggcaggaggactacttgtgtttgttacgactttgctgatcgctatcctccccctttcttctcaggaggagttcagtca cgttagtcagcactaccgtgaggagtttggggatgaggtgacggtacgctcagtgggaactacccgagggctagtagacc tggatgataaaaacgtcgtcaagagaataatgtgcaatgaccagaaaatcaaggtgtcattgaatgacgtcagcgtagcg cggcagtggcgtccgggagatattgtgctgggcagttctgaccatgggtgtaacatacatactgtacatcccgaacaacc agggatatacgccaaaatcctcaccaagacagaaatgaaaaataacagagttgatctcattgtggaacaagccaatccac tagacatttttgagagcgcaaagatttccgtccacgtgaagagagacgctgagaagtttcattctcgacacaagcggagc acatcctctcagcagagcatcgcaaacttcctgaaaattcccctggaatctatagactgggacaaaacagtccatacaac aataccatttaactccgacaagaaggtgctagcgctcaggaaaatgtcctatcaaaaactaccggaaatcattgttaaag atagagccgactttgtagaggccgtcgatccggagttcgagttttcgtgctatgactgttttggggatactacaattgca tatcatctggaaatggagattaaaaagggaacaaacaacgaagcaagcgtaaagacgtacgtttctcagattgagggtcg atccagcggtgcctatgacttttccataaaatctacccgggagctgacactgagtcacaaggccaagctctgggagaccc cgtctatcagagttgacatgttacctctatcccggttccaccgtctgccagctatggtattggaacttaacaccagttcc atagctagtctgtccgtatatgctacagctgtaaacggcaaagtaacagtcaaaggaaactttagtacagtcggggactt tgtcgtttctaaagaataccactccccaacaagtcccccaacacaacaggccacggtgaacaactggacaacaagcaagg gagcaggcaatgcagtcctggctaacaccacattctactataacgtcaatgtctcacaggaggctaattgttttggtgac cctagtgaccttgacagcggaacctgtggtgctcttggaaccgctatattcaggaactcagacgattttgataacctgaa gaagatatttggagaagatctcgtttcgtttaccgacgacgaaaataaaacatgcacatggtgtggccaagccggagcgc agtgtactagttgttcagagtatgaggtagatattgatagagcttgcgcagatcgtctaatgacgtcatcaatggccaca gctattacaaaactagcaaaattcgttcgagctgaatggattgatagaaagctcgttattttggatgcttggacggaacc aacctctcagcacccaaatggtaaatttggtaacgcctcactacataatgagggaagggctgcacggattgggatcagta agccgctcacctccaacactccaaacgtcgaagtagagactgacgcaactatatttaacagatttaaggagctcctccac tgctctggctttcccatggctgtagtagataccccagaatcagtgtatgaggtatgtgtggcagaggaagaagaaagcca atcatacgaccgaaagaagaggaggagaagaaggaagcgagctattatcacaaacaactttgctgtgagcgatgattggt ttgaggaaaaaggacatctgacagacagattgattgatcttccaggtgccattagatatccaagtacaataccaaatcat ctaggtactgatcctagcttcccaaaggatacaactgcaattttaatgtgtggagagtcagatgaagacttcaaaaggga aaacaaatacagcatgaaaaagttattccagtttccctttgataacgtggaatttgaggcggagggaccttcagactctt ggtgcggcacggaaactcggcaatgtaaacaatgttcacacttaactgatagctcagaccctatggaatggtgcgagtca cgaatcatgaactctaggcttattgtcaggatgtacagattgtcaaaaatggttgagaataaagttgttcagaaagggtc cactacaggaaaaagtatcagcattccagctggctggacagaagaggaatttgctaagtgtaggaatggaccagcctatg ggtcattgtctgtacaaacttgtcagactgatatgaaacttacttcgagccaatgtagccagtgtataaaggagagaagt tgttgtatgagtgggtgtctacagggagactgtcagtctggaggaatctgtagtgagatgaacccatttaaagataccat accaacgagtcctagttgtgatgcgaatgacgagtggaaaatgaagcttttcgacaatacatgtgcaggtgatccatgta tgtttttgaatggtgctggattctatgtactgctgaagatactcttactatatgaggtttgttcaccattacgtaacgac gctactatggagtcgtggatggcagatactagcgccgcttataccagcggcgaatccatggtggatttctttcacaactg tcttcagaaatcaacagccgatgtcctgaagattcattaccctggaggagattgggatccaacaataggggtcggattta gtttaaagggagataacccctctttactcaaagagacactggatatatcggatgaagattatcagaaaattttggacggc acaaagaaacttactgaaaaacaagcactgtacctctttggaattgtaacacgtacaaagctgaaaggattgtggagtac tatacgctatgacgacttagctttacttccttcaaatgtcaaaattgctatattcaacgcgaactatcgaggagattttg gtcaaggagtaaataagaaattcaaaacagcagtaacaaatggaaactgggaaggtgccgtcagtgcttacaaatcccat cccgactaccagacaaattacaaatgtctcaccaagaaaacacacgacatatgcaaacgatatgacttcaatgctaagca gttcgaatctatgattaagaaaacaattaaagttggtgattccaagaataatcgccgtcgtcgatctacgtcatcatctt ctccgtcatggtttgaacaactacgtcaagctggaagagctgcaaagatatctatggctaccggctattccttaacaaca catcaattgtcaaatctagcagttgaggctggctttgacttcgtagagcagaaggggtcatcaatttacacgtgcgtcaa agccacgagcggtaccacgtcacatctgatgcaatatccaaaaatcaacttacatggagtagatcctcctacagataaga ttatggagtatttgatatcgccgtacgcagactatgctttgtcttacccactcctggtagacggtaaaaacgaagatata cagctatctgattgttacaaaattaaggattttaaagcccgtaacttccgttaccttcgttttgacactaaactgattga atgtctcgatcttgccagtgattattttgagagttgtattgaggtcatacctgattctggataccgaccccattcattga acaacaaaaacatagatgacagacacgaggaagagaaatggcgctttaacgtgggcatggcggtagaagttcgaccaaag aagaacaatgtagaacagttagagcaaatggctttgacaataatgagaagttgtctaccagaccttagactgaaacgact gaaactaggcatgggtacacacagtgacagagtttatgtagatatacgtacatcttcatccaatgattctacagatatcc tccagttatggaatgttgataatgataaactcatggactctatagatgagacttataaacaattgatgaaagggggtcca tttattcagcctacaaacaaggagagggcttgtaaggaacctgctttaggaaaagataactattacatcaaggatccaag caaagggatttgtttctttgacttctctggtagtttctgtcgggacacagagcaacaccgaaaagacaaggcagaagagc ttgctgaaaaattggcagaagctgcgggatcaaatcagttcccaaaatctgaggcaaggaagaaaactacagcctgtctg gtagaaacatgtggtggatgtgtcggaaaaggagataagtgggagaagaaaacaagagcctgtctggatttgattcagac tttccttgacaaatcaacatctccattcccaatggacaaaatgaaggatcatgctgcattctttaatatagaaaacccaa aatcacatgttcattcacttgcttgtcatgatggcaatgcgtgtattgaggacgtacaacttcattcaattcttagtttc cttcctaaaagtgttgcaagcctttatgaccatatccagggtgtcctcctctgttctcaaagtgacttttag |
|
Protein
| Protein ID | pfu_aug2.0_240.1_00487.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_240.1_00487.t1 MAGGLLVFVTTLLIAILPLSSQEEFSHVSQHYREEFGDEVTVRSVGTTRGLVDLDDKNVVKRIMCNDQKIKVSLNDVSVA RQWRPGDIVLGSSDHGCNIHTVHPEQPGIYAKILTKTEMKNNRVDLIVEQANPLDIFESAKISVHVKRDAEKFHSRHKRS TSSQQSIANFLKIPLESIDWDKTVHTTIPFNSDKKVLALRKMSYQKLPEIIVKDRADFVEAVDPEFEFSCYDCFGDTTIA YHLEMEIKKGTNNEASVKTYVSQIEGRSSGAYDFSIKSTRELTLSHKAKLWETPSIRVDMLPLSRFHRLPAMVLELNTSS IASLSVYATAVNGKVTVKGNFSTVGDFVVSKEYHSPTSPPTQQATVNNWTTSKGAGNAVLANTTFYYNVNVSQEANCFGD PSDLDSGTCGALGTAIFRNSDDFDNLKKIFGEDLVSFTDDENKTCTWCGQAGAQCTSCSEYEVDIDRACADRLMTSSMAT AITKLAKFVRAEWIDRKLVILDAWTEPTSQHPNGKFGNASLHNEGRAARIGISKPLTSNTPNVEVETDATIFNRFKELLH CSGFPMAVVDTPESVYEVCVAEEEESQSYDRKKRRRRRKRAIITNNFAVSDDWFEEKGHLTDRLIDLPGAIRYPSTIPNH LGTDPSFPKDTTAILMCGESDEDFKRENKYSMKKLFQFPFDNVEFEAEGPSDSWCGTETRQCKQCSHLTDSSDPMEWCES RIMNSRLIVRMYRLSKMVENKVVQKGSTTGKSISIPAGWTEEEFAKCRNGPAYGSLSVQTCQTDMKLTSSQCSQCIKERS CCMSGCLQGDCQSGGICSEMNPFKDTIPTSPSCDANDEWKMKLFDNTCAGDPCMFLNGAGFYVLLKILLLYEVCSPLRND ATMESWMADTSAAYTSGESMVDFFHNCLQKSTADVLKIHYPGGDWDPTIGVGFSLKGDNPSLLKETLDISDEDYQKILDG TKKLTEKQALYLFGIVTRTKLKGLWSTIRYDDLALLPSNVKIAIFNANYRGDFGQGVNKKFKTAVTNGNWEGAVSAYKSH PDYQTNYKCLTKKTHDICKRYDFNAKQFESMIKKTIKVGDSKNNRRRRSTSSSSPSWFEQLRQAGRAAKISMATGYSLTT HQLSNLAVEAGFDFVEQKGSSIYTCVKATSGTTSHLMQYPKINLHGVDPPTDKIMEYLISPYADYALSYPLLVDGKNEDI QLSDCYKIKDFKARNFRYLRFDTKLIECLDLASDYFESCIEVIPDSGYRPHSLNNKNIDDRHEEEKWRFNVGMAVEVRPK KNNVEQLEQMALTIMRSCLPDLRLKRLKLGMGTHSDRVYVDIRTSSSNDSTDILQLWNVDNDKLMDSIDETYKQLMKGGP FIQPTNKERACKEPALGKDNYYIKDPSKGICFFDFSGSFCRDTEQHRKDKAEELAEKLAEAAGSNQFPKSEARKKTTACL VETCGGCVGKGDKWEKKTRACLDLIQTFLDKSTSPFPMDKMKDHAAFFNIENPKSHVHSLACHDGNACIEDVQLHSILSF LPKSVASLYDHIQGVLLCSQSDF |
|