Gene
| Gene Model ID | pfu_aug2.0_241.1_03856 |
|---|---|
| Locus | scaffold241.1 : 96136 ... 102374 : + |
| To GenomeBrowser | scaffold241.1:96136..102374 |
| Genes list of scaffold | scaffold241.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_241.1_03856.t1 | 6 | 1 | RCC1_2 | 4 | 15 | 0.0 | 156.7 | 0.0016 | 5.8 | 6.6 |
| pfu_aug2.0_241.1_03856.t1 | 5 | 1 | RCC1 | 5 | 53 | 0.0 | 228.0 | 2.6e-15 | 9.7e-12 | 44.9 |
| pfu_aug2.0_241.1_03856.t1 | 6 | 2 | RCC1_2 | 40 | 69 | 0.0 | 156.7 | 2.2e-14 | 8.0e-11 | 41.2 |
| pfu_aug2.0_241.1_03856.t1 | 5 | 2 | RCC1 | 56 | 106 | 0.0 | 228.0 | 3.3e-15 | 1.2e-11 | 44.5 |
| pfu_aug2.0_241.1_03856.t1 | 6 | 3 | RCC1_2 | 93 | 122 | 0.0 | 156.7 | 6.4e-14 | 2.4e-10 | 39.7 |
| pfu_aug2.0_241.1_03856.t1 | 5 | 3 | RCC1 | 110 | 160 | 0.0 | 228.0 | 2.8e-12 | 1.0e-08 | 35.1 |
| pfu_aug2.0_241.1_03856.t1 | 6 | 4 | RCC1_2 | 148 | 176 | 0.0 | 156.7 | 5.1e-16 | 1.9e-12 | 46.4 |
| pfu_aug2.0_241.1_03856.t1 | 5 | 4 | RCC1 | 163 | 213 | 0.0 | 228.0 | 1.2e-18 | 4.6e-15 | 55.5 |
| pfu_aug2.0_241.1_03856.t1 | 6 | 5 | RCC1_2 | 202 | 229 | 0.0 | 156.7 | 1.3e-09 | 4.8e-06 | 26.0 |
| pfu_aug2.0_241.1_03856.t1 | 5 | 5 | RCC1 | 219 | 265 | 0.0 | 228.0 | 1.9e-17 | 7.1e-14 | 51.7 |
| pfu_aug2.0_241.1_03856.t1 | 6 | 6 | RCC1_2 | 252 | 266 | 0.0 | 156.7 | 0.00042 | 1.6 | 8.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_241.1_03856.t1 | gi|676426644|ref|XP_009044689.1| | hypothetical protein LOTGIDRAFT_223779 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_241.1_03856.t1 | gi|524897319|ref|XP_005105122.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_241.1_03856.t1 | gi|524897323|ref|XP_005105124.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_241.1_03856.t1 | gi|524897321|ref|XP_005105123.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_241.1_03856.t1 | gi|524906870|ref|XP_005108600.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_241.1_03856.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03856.t1 atggcagccgctgtgtttggttggggaagtgccaagtatggacaactgggtatcggaggatcaggggaggaaaatgttct atctccgaaagaagtgttatccctccagtctctgaagatcaaggatataagttgtggagaaagacattctctgatactaa cgcaggatggagctatgtattcatgtggtaacaatgattatggtcagctgggacaaaaaaatagctctagtacaacaact cgatttgagaaagtggagtcgttgactaacatgacggtgacccaggtagtggtgggggctaatcattgcctcgccttaac cagtgccggggaggtgttcagctggggggacaatagtaaggggcagttagggagaggtccagtgtcacaggcagaacaga ggaataccaaacttgttaaagatctggctatatataatacagtacagattgcatcaggagcttatcattgtttagcacta actgatgatggtaagctgttttcttggggtgataatacacatggtcagctaggtttagggccaggcactgcctaccatga taggccccaacaaataatgtctctccgtggtataccgttagcccagatcactgccggagggtatcatagctttgtcctgt cattgtccagggcagtgtttggatggggcaaaaactgttttggccagcttggtgtaggtgatgaaaaagatcatccacac cctacccattgtaagtcactgaggaaccagaaagtcaagtatataacctgtggggaggaacatacagtggctcttactaa gctatag |
|
Protein
| Protein ID | pfu_aug2.0_241.1_03856.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03856.t1 MAAAVFGWGSAKYGQLGIGGSGEENVLSPKEVLSLQSLKIKDISCGERHSLILTQDGAMYSCGNNDYGQLGQKNSSSTTT RFEKVESLTNMTVTQVVVGANHCLALTSAGEVFSWGDNSKGQLGRGPVSQAEQRNTKLVKDLAIYNTVQIASGAYHCLAL TDDGKLFSWGDNTHGQLGLGPGTAYHDRPQQIMSLRGIPLAQITAGGYHSFVLSLSRAVFGWGKNCFGQLGVGDEKDHPH PTHCKSLRNQKVKYITCGEEHTVALTKL |
|