Gene
| Gene Model ID | pfu_aug2.0_2411.1_05523 |
|---|---|
| Locus | scaffold2411.1 : 89225 ... 98732 : - |
| To GenomeBrowser | scaffold2411.1:89225..98732 |
| Genes list of scaffold | scaffold2411.1 |
| Synonym | pfu_aug1.0_14396.1_61349 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mckusick-kaufman bardet-biedl syndromes chaperonin | GO:0003008 GO:0005488 GO:0005622 GO:0007420 GO:0009653 GO:0022607 GO:0043226 GO:0048869 GO:0050794 GO:0050896 GO:0065008 GO:1902589 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2411.1_05523.t1 | 1 | 1 | Cpn60_TCP1 | 9 | 238 | 1.6e-16 | 60.0 | 5.6e-20 | 8.4e-16 | 57.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2411.1_05523.t1 | gi|589942027|ref|XP_006983732.1| | PREDICTED: mcKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin isoform X1 [Peromyscus maniculatus bairdii] | 1.0e-23 |
| pfu_aug2.0_2411.1_05523.t1 | gi|560970170|ref|XP_006207450.1| | PREDICTED: mcKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin [Vicugna pacos] | 2.0e-23 |
| pfu_aug2.0_2411.1_05523.t1 | gi|326914953|ref|XP_003203787.1| | PREDICTED: mcKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin [Meleagris gallopavo] | 2.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_2411.1_05523.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2411.1_05523.t1 gctgtacaccatacctgtcgttcactttgcccagagaagatcatataggcaggcttacatcggtaggccttatgacgatc agtgggaagaattatctccacttacagaattccgattcttgtctagtcaccttagtactatgtgctccgcaagaggaagc tgtagatgaattaaagattttggttgggacagctctcagcacccttcagcatactttaagccagccctttgttctgcctg gaggtggctgctggcagatttaccttgcagaggctctaaaactaaaggttcaaaaggagatgtcaaaactcacggaaact gttcagtgttcaagaaccatactaagcactgcttgccggatatttactgaaagtttacaatctgttgccatggcgatagc agaggagggggaaacccacatgactagtgccatacaacctcactactggagagttccaaattacgatgaatctttggttg acacacttcttatgtgtagttgtggacaggttaaaaagttcggaagagacttaagtttcttagaagaaaataatatttca gagtctcagaatgaatcgtttgtgaagaatgaagctgggatgatatctgattttcctatttttcttgatttgtacacttc caatgtctcggctctaaagatggctatattaactgcaaatactatattaggtatagggcaatttattgatgacagaaatt aa |
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Protein
| Protein ID | pfu_aug2.0_2411.1_05523.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2411.1_05523.t1 CTPYLSFTLPREDHIGRLTSVGLMTISGKNYLHLQNSDSCLVTLVLCAPQEEAVDELKILVGTALSTLQHTLSQPFVLPG GGCWQIYLAEALKLKVQKEMSKLTETVQCSRTILSTACRIFTESLQSVAMAIAEEGETHMTSAIQPHYWRVPNYDESLVD TLLMCSCGQVKKFGRDLSFLEENNISESQNESFVKNEAGMISDFPIFLDLYTSNVSALKMAILTANTILGIGQFIDDRN |
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