Gene
| Gene Model ID | pfu_aug2.0_242.1_07218 |
|---|---|
| Locus | scaffold242.1 : 243416 ... 268348 : - |
| To GenomeBrowser | scaffold242.1:243416..268348 |
| Genes list of scaffold | scaffold242.1 |
| Synonym | pfu_aug1.0_7861.1_60322 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_242.1_07218.t1 | 3 | 1 | PAN_1 | 51 | 104 | 1.5e-10 | 40.6 | 5.5e-08 | 0.00014 | 21.5 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 1 | PAN_3 | 57 | 89 | 6.7e-06 | 25.6 | 3.4e-06 | 0.0084 | 15.7 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 1 | Lectin_C | 71 | 96 | 1.6e-18 | 67.2 | 0.074 | 180.0 | 2.7 |
| pfu_aug2.0_242.1_07218.t1 | 2 | 1 | Herpes_UL45 | 107 | 191 | 1.1e-08 | 34.7 | 5.0e-07 | 0.0012 | 18.2 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 2 | Lectin_C | 129 | 228 | 1.6e-18 | 67.2 | 8.9e-09 | 2.2e-05 | 25.0 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 2 | PAN_1 | 188 | 233 | 1.5e-10 | 40.6 | 5.4e-09 | 1.3e-05 | 24.8 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 2 | PAN_3 | 190 | 229 | 6.7e-06 | 25.6 | 4.0e-06 | 0.0098 | 15.4 |
| pfu_aug2.0_242.1_07218.t1 | 2 | 2 | Herpes_UL45 | 248 | 289 | 1.1e-08 | 34.7 | 5.6e-06 | 0.014 | 14.8 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 3 | PAN_3 | 259 | 271 | 6.7e-06 | 25.6 | 0.22 | 530.0 | 0.3 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 3 | PAN_1 | 260 | 271 | 1.5e-10 | 40.6 | 0.99 | 2400.0 | -1.7 |
| pfu_aug2.0_242.1_07218.t1 | 3 | 3 | Lectin_C | 270 | 380 | 1.6e-18 | 67.2 | 2.5e-16 | 6.1e-13 | 49.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_242.1_07218.t1 | gi|742249675|ref|XP_010866585.1| | PREDICTED: hepatic lectin-like [Esox lucius] | 7.0e-12 |
| pfu_aug2.0_242.1_07218.t1 | gi|657578941|ref|XP_008293367.1| | PREDICTED: C-type lectin domain family 4 member M-like [Stegastes partitus] | 3.0e-11 |
| pfu_aug2.0_242.1_07218.t1 | gi|390351492|ref|XP_782283.3| | PREDICTED: macrophage mannose receptor 1 isoform X2 [Strongylocentrotus purpuratus] | 4.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_242.1_07218.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_242.1_07218.t1 atgctttcccagcaaagtacacattggatactcttatcttttattcctatatcacttataacccctttggatagcgccgt cacgtacaaagtcagtaagagattcggtgatacatccaatgatgacgtttggacgcagcaggagagtattaccctgccgg gtaggaacagcttgataacgtgtatgtccctgtgtgcatctggtgacaagtgtatgtcgtactcatataatgacgtagat gaacaatgtgtgcattacaccacgtcctataaagtaaaatcacaatcgaaaagtagtgcttggaaatattacgtattctc agactgtccagatgactggcaagtagttggagataattgctattaccttcacgctagaaaccgatacatgtggtatgacg cccagaaattttgtgagagatatggtgcaaagttggccgagttacacacacgtgaagaatatgaaagtcttctgtcgatg gcatatagatctgaacatgacgtcatcataagactcagcagaaggtttggcgacgaccagacgctggatttttggacgtc agaaaatagtaaaacaagcagtggtataagtagtgtaatagattgcatgtctttatgtttggcgaatactacgtgctggt cttacgggtacgacgaagggagcaaagaatgtacacattataacaccgcttacagagtcgaggaaaaggcagtgacacaa atccaggatttctatatattttcagattgtgaggatggatggataatacttggtgataactgttactactatagcacgga tgacacatcaacctggtttgatgcacaggcattttgtggaggttatggtgccaaattagcagagcctcgatcacgtgatg aatatgatctgatagctaacgcagcatcccgtagtggaatgtattggctgggaggacaagacattataacagaggatgta tggttctggacaaaaaccaaggaaaacttaacctattttgtatgggacagtcataccagtcaaccaaacgaagggacaga acagaactgtctggcaacctacctacagagatcgtcaccgccggaacactggcacgacaaggaatgtgatgagaaactgg cttatcctatatgtgaacgattcattaaatattaa |
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Protein
| Protein ID | pfu_aug2.0_242.1_07218.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_242.1_07218.t1 MLSQQSTHWILLSFIPISLITPLDSAVTYKVSKRFGDTSNDDVWTQQESITLPGRNSLITCMSLCASGDKCMSYSYNDVD EQCVHYTTSYKVKSQSKSSAWKYYVFSDCPDDWQVVGDNCYYLHARNRYMWYDAQKFCERYGAKLAELHTREEYESLLSM AYRSEHDVIIRLSRRFGDDQTLDFWTSENSKTSSGISSVIDCMSLCLANTTCWSYGYDEGSKECTHYNTAYRVEEKAVTQ IQDFYIFSDCEDGWIILGDNCYYYSTDDTSTWFDAQAFCGGYGAKLAEPRSRDEYDLIANAASRSGMYWLGGQDIITEDV WFWTKTKENLTYFVWDSHTSQPNEGTEQNCLATYLQRSSPPEHWHDKECDEKLAYPICERFIKY |
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