Gene
| Gene Model ID | pfu_aug2.0_242.1_07220 |
|---|---|
| Locus | scaffold242.1 : 285106 ... 295448 : - |
| To GenomeBrowser | scaffold242.1:285106..295448 |
| Genes list of scaffold | scaffold242.1 |
| Synonym | pfu_aug1.0_10706.1_39097 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_242.1_07220.t1 | 5 | 1 | I-set | 2 | 16 | 4.8e-26 | 90.4 | 0.069 | 93.0 | 2.9 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 1 | V-set | 2 | 22 | 3.5e-11 | 43.0 | 0.018 | 25.0 | 4.8 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 1 | Ig_2 | 3 | 34 | 1.4e-30 | 105.2 | 0.037 | 50.0 | 4.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 1 | ig | 4 | 15 | 1.2e-11 | 44.5 | 0.81 | 1100.0 | -0.2 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 1 | C1-set | 4 | 16 | 1.9e-06 | 27.7 | 0.56 | 760.0 | 0.2 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 2 | Ig_2 | 41 | 128 | 1.4e-30 | 105.2 | 1.1e-07 | 0.00015 | 21.7 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 1 | Ig_3 | 41 | 122 | 3.0e-21 | 75.6 | 9.6e-07 | 0.0013 | 19.2 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 2 | V-set | 48 | 93 | 3.5e-11 | 43.0 | 0.016 | 21.0 | 5.0 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 2 | I-set | 49 | 124 | 4.8e-26 | 90.4 | 1.3e-06 | 0.0018 | 18.0 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 2 | C1-set | 51 | 128 | 1.9e-06 | 27.7 | 1.3e-06 | 0.0018 | 18.2 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 2 | ig | 54 | 119 | 1.2e-11 | 44.5 | 5.1e-06 | 0.0069 | 16.4 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 1 | C2-set_2 | 55 | 125 | 8.4e-17 | 60.8 | 1.1e-11 | 1.4e-08 | 34.4 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 2 | Ig_3 | 140 | 211 | 3.0e-21 | 75.6 | 1.6e-05 | 0.022 | 15.2 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 3 | Ig_2 | 151 | 224 | 1.4e-30 | 105.2 | 1.2e-07 | 0.00017 | 21.6 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 3 | I-set | 153 | 224 | 4.8e-26 | 90.4 | 2.2e-05 | 0.029 | 14.2 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 3 | V-set | 154 | 181 | 3.5e-11 | 43.0 | 0.056 | 76.0 | 3.2 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 2 | C2-set_2 | 158 | 180 | 8.4e-17 | 60.8 | 5.5 | 7500.0 | -3.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 3 | ig | 159 | 189 | 1.2e-11 | 44.5 | 1.2 | 1700.0 | -0.8 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 3 | C1-set | 169 | 186 | 1.9e-06 | 27.7 | 0.7 | 940.0 | -0.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 4 | I-set | 238 | 299 | 4.8e-26 | 90.4 | 5.1e-07 | 0.00068 | 19.4 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 3 | Ig_3 | 242 | 298 | 3.0e-21 | 75.6 | 5.6e-09 | 7.5e-06 | 26.3 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 3 | C2-set_2 | 243 | 268 | 8.4e-17 | 60.8 | 0.00035 | 0.47 | 10.3 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 4 | Ig_2 | 244 | 310 | 1.4e-30 | 105.2 | 9.4e-10 | 1.3e-06 | 28.4 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 4 | V-set | 244 | 275 | 3.5e-11 | 43.0 | 0.25 | 340.0 | 1.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 4 | ig | 245 | 296 | 1.2e-11 | 44.5 | 9.5e-05 | 0.13 | 12.4 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 4 | Ig_3 | 317 | 398 | 3.0e-21 | 75.6 | 9.6e-06 | 0.013 | 16.0 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 5 | Ig_2 | 321 | 402 | 1.4e-30 | 105.2 | 3.3e-08 | 4.5e-05 | 23.4 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 4 | C2-set_2 | 322 | 362 | 8.4e-17 | 60.8 | 0.00012 | 0.16 | 11.8 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 5 | I-set | 328 | 405 | 4.8e-26 | 90.4 | 6.2e-12 | 8.4e-09 | 35.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 5 | V-set | 328 | 400 | 3.5e-11 | 43.0 | 1.9e-08 | 2.6e-05 | 24.0 |
| pfu_aug2.0_242.1_07220.t1 | 4 | 4 | C1-set | 331 | 397 | 1.9e-06 | 27.7 | 0.069 | 94.0 | 3.1 |
| pfu_aug2.0_242.1_07220.t1 | 5 | 5 | ig | 332 | 397 | 1.2e-11 | 44.5 | 3.1e-05 | 0.042 | 13.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_242.1_07220.t1 | gi|676429506|ref|XP_009045622.1| | hypothetical protein LOTGIDRAFT_171177 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_242.1_07220.t1 | gi|524876562|ref|XP_005094996.1| | PREDICTED: kin of IRRE-like protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_242.1_07220.t1 | gi|241862297|ref|XP_002416368.1| | irregular chiasm C-roughest protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_242.1_07220.t1 | gi|755878421|ref|XP_011293010.1| | PREDICTED: irregular chiasm C-roughest protein [Musca domestica] | 0.0 |
| pfu_aug2.0_242.1_07220.t1 | gi|391338142|ref|XP_003743420.1| | PREDICTED: irregular chiasm C-roughest protein-like [Metaseiulus occidentalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_242.1_07220.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_242.1_07220.t1 atggatatacaacttgaagatgacgcagagtatagatgtcaggtgacaccaaccgacgatgacccaacgccattactcag taacaaggtcactctcactgttagaattcctccgtttaatcctgtgataataggaggcccagttgtggctgtagaactag ggaaagctaccaatataacctgtctggtcaatggtggcaaaccaggcccgacagttacatggtacatagataactcaagg attgctaacaatgtttttaccaaaacaaccataaggccaaataaaactgaggacgttgtctcatccgttaccatggtagc caaggaagaggatgctgggaagactctggaatgctgggcaataaatgatgcactcaaagaacacctgaaaaccacagcta cgctagatgtacaattcaagccaaaagtaaccataaagcacaatatcacccggcctataaaggagaaggacaatattagg attacatgtaaaaaaatagccaatccctcaacagttacttggaggtggtaccgtaacaatgctctgatacaaggtgaaaa caaagactacctggatatacgcagtataggaccagagtatgacaaaaacaagataaaatgtgaagccactaactcaatag gtgttgcctccgaagaagttcagctcacggtactatatggtgcctactttaccggtgtgcggagatacattccggttgac attggtgacagaaatgttaagttagaatgcatagcggagggaaatcccaaaccgagccttatctggcgcaaaaaagggaa agacaactaccagccgcttagcactaactctatttataccattccttacgtcatgccctctagtattggagcctatgtat gtacggccacgtcagtcaatactggatttcctgatgtcagcgtggaagtccatttgcttttgaaaggaccacctgagata ataagtgaaactcagcagtatgctgctccggaggacacggtgtcggtggaatgtgtggccaggtctgtacctgagggaac catagagtggtaccgaagtaacgaaaaaataacgtacgccgagtcagggagatatacccacacctatacaccaatggctg atggcctgaaagacacgctacatatcaaggattttcatgattctgatttcggggaatataattgtaccgttatcaatagt cggggaaacgatagcttggtcattgtgctccttgaaaaagaggtgcttcccttggcatacatcatagggggcgtgtgtgg gggcgttgctgtgttactatttatagctggagcttgtatactgtaccatcgaatgaagcactctgacagtgattcctacg cagagacagatagtaacacagagatcagaaaacgggacaaaacggaatcgcctttagacttcggaaaatcaacgttaatg gatcagtggagacaggacttaaattatcagtgtccatcagattatgatgaagtatataataaggatcccagattacctag tagtaactacggaacgttaaaatctgacaattttataaatgcatatgaaaatcataacggacacttattcagtgactata cacatagaggggatgaaacgtttcctacagaaaatacaaatggttacacaaatggaacatatgggaccagttcctttaga agtgcttctcgaactgattttgtgaaaccagtcgaatatactgatccatatggatatagactgcctccagcagacaattc tactacacaattagctacaaatgtataa |
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Protein
| Protein ID | pfu_aug2.0_242.1_07220.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_242.1_07220.t1 MDIQLEDDAEYRCQVTPTDDDPTPLLSNKVTLTVRIPPFNPVIIGGPVVAVELGKATNITCLVNGGKPGPTVTWYIDNSR IANNVFTKTTIRPNKTEDVVSSVTMVAKEEDAGKTLECWAINDALKEHLKTTATLDVQFKPKVTIKHNITRPIKEKDNIR ITCKKIANPSTVTWRWYRNNALIQGENKDYLDIRSIGPEYDKNKIKCEATNSIGVASEEVQLTVLYGAYFTGVRRYIPVD IGDRNVKLECIAEGNPKPSLIWRKKGKDNYQPLSTNSIYTIPYVMPSSIGAYVCTATSVNTGFPDVSVEVHLLLKGPPEI ISETQQYAAPEDTVSVECVARSVPEGTIEWYRSNEKITYAESGRYTHTYTPMADGLKDTLHIKDFHDSDFGEYNCTVINS RGNDSLVIVLLEKEVLPLAYIIGGVCGGVAVLLFIAGACILYHRMKHSDSDSYAETDSNTEIRKRDKTESPLDFGKSTLM DQWRQDLNYQCPSDYDEVYNKDPRLPSSNYGTLKSDNFINAYENHNGHLFSDYTHRGDETFPTENTNGYTNGTYGTSSFR SASRTDFVKPVEYTDPYGYRLPPADNSTTQLATNV |
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