Gene
| Gene Model ID | pfu_aug2.0_243.1_10486 |
|---|---|
| Locus | scaffold243.1 : 3988 ... 31575 : - |
| To GenomeBrowser | scaffold243.1:3988..31575 |
| Genes list of scaffold | scaffold243.1 |
| Synonym | pfu_aug1.0_2298.1_58855 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_243.1_10486.t2 | 2 | 1 | MAM | 7 | 72 | 0.0 | 211.6 | 1.0e-16 | 3.8e-13 | 49.5 |
| pfu_aug2.0_243.1_10486.t2 | 2 | 2 | MAM | 80 | 245 | 0.0 | 211.6 | 0.0 | 0.0 | 160.2 |
| pfu_aug2.0_243.1_10486.t2 | 2 | 1 | TSP_1 | 254 | 303 | 1.4e-21 | 76.3 | 1.4e-13 | 5.2e-10 | 39.2 |
| pfu_aug2.0_243.1_10486.t2 | 2 | 2 | TSP_1 | 310 | 360 | 1.4e-21 | 76.3 | 1.1e-14 | 4.0e-11 | 42.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_243.1_10486.t2 | gi|260794220|ref|XP_002592107.1| | hypothetical protein BRAFLDRAFT_84976 [Branchiostoma floridae] | 9.80909e-45 |
Transcript
| Transcript ID | pfu_aug2.0_243.1_10486.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10486.t1 atgagaagcaaaagcgtaaagcctatttaactaccagatatagcccaaattaaagctttgtcaacagacaatgatgacaa cgacgacactgaagcattattgttcttcacttgtggttttgagaccagtggcaccttatgtggatttacacaagatacca cggacgattttgattggacatggcaacaagaccatacttcttcatctcacaccggcccatctggagatcatacataccaa caccaataccataggcatggacattacatgtacacagaggcatcagcgaagcggcaggattacagagctcgtcttatatc tccaacctttacagggaaggtgcctttgtgcctaacgttatattataatatgtatggacatgatattggatcgttaaatg tgttcacccagatagtgtttgagggaattacaggaaatggtttccaaggtgacatagctattgatgatataagtctagag cctggaaactgtgattctgttgcattggtattttcatgtgattttgaagacaacgcaactttgtgtggcttcactcaaga aacaaaagacgattttgattggacgaggcaatatggtcaaactccgagtcaaagcaccggaccactgactgaccatacat ttaacaaccaatacaatagtcatggtcactacatgtacactgaggcatccagtccacaaaaaaaggatgacaaagctctt ctgatgtcacctttcttcatagagtcaatgcctctttgtctgatgttttattacaatatgcacggaaatcacattggatc gcttcatgtttttatacagactagagatggacacagaccaactccattttctatctggggatattctggaactgaatggc atcttgctcaagtcaacatttcccaatcaacagccaaaataggcttccaggttgtttttgagggtatcatcggggatgat ttcttgggagatatagccattgatgatgtaagtgttctgagaggacaatgtagttctgcaattgacggaggatggacgac atggtcactctggggtacgtgctccgtatcttgtggcggaggactgaagcagcgatcccgctcctgtagcaatcctgtcc caaaaaacaacggaacggcatgtgtcggatatgataaacaagcagaagtgtgcaacagagtttcctgtcccgttagcgtt gcctggtccacgtggtctccatggagcgcttgtacattatcgtgtggcgcaggtctgaaacagcgaactcgcacgtgcaa taatccctaccctgttcataatgctgcagcatgcgcaggtcacgacatacaaagtgaagtgtgcaacagaattgcatgtc ccggttcacaagctccaacatcgtggataacagtaccttttggctaa |
|
| Transcript ID | pfu_aug2.0_243.1_10486.t2 |
| Definition | - |
>pfu_aug2.0_243.1_10486.t2 atgtataacttttcccttaagacaactgatggccagaaggacatgttactgtcaatttcgggtgaccaaggggatcaatg gaacttggccaatgttactgtacctttatcaacagttttaagtggatttacgatagtgtttgagggaattacaggaaatg gtttccaaggtgacatagctattgatgatataagtctagagcctggaaactgtgattctgttgcattggtattttcatgt gattttgaagacaacgcaactttgtgtggcttcactcaagaaacaaaagacgattttgattggacgaggcaatatggtca aactccgagtcaaagcaccggaccactgactgaccatacatttaacaaccaatacaatagtcatggtcactacatgtaca ctgaggcatccagtccacaaaaaaaggatgacaaagctcttctgatgtcacctttcttcatagagtcaatgcctctttgt ctgatgttttattacaatatgcacggaaatcacattggatcgcttcatgtttttatacagactagagatggacacagacc aactccattttctatctggggatattctggaactgaatggcatcttgctcaagtcaacatttcccaatcaacagccaaaa taggcttccaggttgtttttgagggtatcatcggggatgatttcttgggagatatagccattgatgatgtaagtgttctg agaggacaatgtagttctgcaattgacggaggatggacgacatggtcactctggggtacgtgctccgtatcttgtggcgg aggactgaagcagcgatcccgctcctgtagcaatcctgtcccaaaaaacaacggaacggcatgtgtcggatatgataaac aagcagaagtgtgcaacagagtttcctgtcccgttagcgttgcctggtccacgtggtctccatggagcgcttgtacatta tcgtgtggcgcaggtctgaaacagcgaactcgcacgtgcaataatccctaccctgttcataatgctgcagcatgcgcagg tcacgacatacaaagtgaagtgtgcaacagaattgcatgtcccggttcacaagctccaacatcgtggataacagtacctt ttggctaa |
|
Protein
| Protein ID | pfu_aug2.0_243.1_10486.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10486.t1 MRSKSVKPIXLPDIAQIKALSTDNDDNDDTEALLFFTCGFETSGTLCGFTQDTTDDFDWTWQQDHTSSSHTGPSGDHTYQ HQYHRHGHYMYTEASAKRQDYRARLISPTFTGKVPLCLTLYYNMYGHDIGSLNVFTQIVFEGITGNGFQGDIAIDDISLE PGNCDSVALVFSCDFEDNATLCGFTQETKDDFDWTRQYGQTPSQSTGPLTDHTFNNQYNSHGHYMYTEASSPQKKDDKAL LMSPFFIESMPLCLMFYYNMHGNHIGSLHVFIQTRDGHRPTPFSIWGYSGTEWHLAQVNISQSTAKIGFQVVFEGIIGDD FLGDIAIDDVSVLRGQCSSAIDGGWTTWSLWGTCSVSCGGGLKQRSRSCSNPVPKNNGTACVGYDKQAEVCNRVSCPVSV AWSTWSPWSACTLSCGAGLKQRTRTCNNPYPVHNAAACAGHDIQSEVCNRIACPGSQAPTSWITVPFG |
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| Protein ID | pfu_aug2.0_243.1_10486.t2 |
| Definition | - |
>pfu_aug2.0_243.1_10486.t2 MYNFSLKTTDGQKDMLLSISGDQGDQWNLANVTVPLSTVLSGFTIVFEGITGNGFQGDIAIDDISLEPGNCDSVALVFSC DFEDNATLCGFTQETKDDFDWTRQYGQTPSQSTGPLTDHTFNNQYNSHGHYMYTEASSPQKKDDKALLMSPFFIESMPLC LMFYYNMHGNHIGSLHVFIQTRDGHRPTPFSIWGYSGTEWHLAQVNISQSTAKIGFQVVFEGIIGDDFLGDIAIDDVSVL RGQCSSAIDGGWTTWSLWGTCSVSCGGGLKQRSRSCSNPVPKNNGTACVGYDKQAEVCNRVSCPVSVAWSTWSPWSACTL SCGAGLKQRTRTCNNPYPVHNAAACAGHDIQSEVCNRIACPGSQAPTSWITVPFG |
|