Gene
| Gene Model ID | pfu_aug2.0_243.1_10492 |
|---|---|
| Locus | scaffold243.1 : 220770 ... 227571 : + |
| To GenomeBrowser | scaffold243.1:220770..227571 |
| Genes list of scaffold | scaffold243.1 |
| Synonym | pfu_aug1.0_13492.1_39501 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_243.1_10492.t1 | 2 | 1 | RVT_1 | 167 | 202 | 5.3e-18 | 65.1 | 1.3 | 6400.0 | -3.8 |
| pfu_aug2.0_243.1_10492.t1 | 1 | 1 | Exo_endo_phos | 637 | 846 | 1.4e-12 | 48.1 | 5.5e-16 | 2.7e-12 | 47.1 |
| pfu_aug2.0_243.1_10492.t1 | 1 | 1 | Exo_endo_phos_2 | 728 | 850 | 3.3e-13 | 49.2 | 5.0e-16 | 2.5e-12 | 46.4 |
| pfu_aug2.0_243.1_10492.t1 | 2 | 2 | RVT_1 | 1127 | 1334 | 5.3e-18 | 65.1 | 2.5e-21 | 1.2e-17 | 63.9 |
Transcript
| Transcript ID | pfu_aug2.0_243.1_10492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10492.t1 atggaggtcgtaaatacaggacgacccagaaggataagaaatccaagaaatgtttacacgcctagcaaggattcgaacaa tagaattcagatggattacactttgaataaatccaaagcaatcgatcaaaaattgaaagcggctacgagaaaagaaaacg tagaattcattttgaagggtgaaacattagttctcgcattttcggctgccacatatgaactttacaaaactgtaattcga acatactttgagaaacgtacagacagaatatgtgttgtagtacatgagaaggctagcaataccaaatgtggtgaaaatgc cataatagaacattccttgtctatttgtgagccatcatctaataatcaactctatcgtatgaacttctttcacactacaa gcaaggtaacggtcaacggtgaaaggctagaattattcatgaacgaagactgcaaaaatattctcaaggaggtaaatgga aacaccgacataacgcagctagacaaactcatagaggagaaatgtactaaatatcttgagaacttatctataaatgcaaa tcgaagcagcaatccagcaatgaaagaaagtcagaaaactactacaacaaatgcgcaaaacaaaggtgatcataatagca gtcataaaatgattataccacatgttgtagacaaaaataattccgccaaagatatcctgaacgaagaaactaacgtaaaa gttatctgtattatttgtgatggagatatcgcaccaatagaccatgcaatgtgcgacatatgtggaaatcatatccatat ccaatgttgtaaaaacgatgaacataatattaatctttgcttgtcatgtgttgcaatggaagaacaaaatgtgatcacta aaagcgacaatagcgagagaacacaaagcaacgagtcacagtcaacatctacgcattcgatcaataacgtaggaagcaaa aacaagaatagaaagcgttctcaagaaaaaatgaactcgcatacaataacaactaataatgaaccaaataaaggtgtatc aaacgagtcaacaccagtccaacagaaaaaagtcaaaacgagtagcacaaatactacaagtaacaacgaaacgaaaaaag tacagcaagaagaaacagtaacaataaaaatgagggacttgcgcttgaaagaaaacaaattaaaaaagtgggaggaagaa ctgaaattaaaagagcagcaacttgcaaacattgaatgtgataaagtacgcttagagacatatgtacttaaactcgagtc aaaaaaccaagagctcgagaactcgattaaaattctgaaacggcgcatttttgagacagatcgcaaccaaagcagtgatt cctataatcaagagaacacaaactgtgcaaacgcatatccccctcaacaaaatcagccggtacatatgttagtcaacaag atacacgataaagtgacacagttcgtgctacagaaagtagataagcaactggatgcattactagacacacatgatgtcag tcaaagcagtgcagaaatatattgtcaacaaactgcctcaaatcaaagtgacaatgttagaacaaactgtggcacagcaa acataggtaacacatttagccataatgtacaaccaataagtcaggaatggaaatacagaactcctcatacaacgcgctac accaatgtacaacatgatgtctcatcacatacaaattacagaaatgtgaagacacaccctcctagcacagatgcttgtga tagtgaatcaatctcagagcaatccaactgcgaatctaccaccaatagtcttaacattataaaggaggattttaaccagg aatttttaactgtatctcttaacatttgtgcttttaactgtaagaacattatgacaagtattttagcaatagaagagata atgaaacatacagatatactacttatccaagaacattggctctttaattaccagttaccagtactaaatgatttagcatc tcagatacgtggaatcggaaaagctgtagatgacgacaatccaatttcacccatccaaaaacctagaggctatggaggag tagctatattatggaaagatgaactagacagtaagatagaagtcctaaaagatgggtctaataggatgcaatgcattaga gtcaaaactacctcgcaacctattttactagtatccatatacctacccgcaaaaggttgtcgtaccaacccacaagatta tctagactgtatggatcaattacaggaaattcttgacaagtatcaagatcatcatatatgtattgggggcgactttaatg aacatctcaccaccggcaataacagcgaaagaatacgttgtgttcggcaactaatatctgacaatcaacttcaatcgtta acgtatggatcaacattcatccacccaaatggaaaagactcgagtgaaattgattactttttagtcaaaacacatagtga tataagagtcaaaaagatggataaaatggaaggtctagaaacgaatacatcagatcatcaccctatcagatgtaacttaa gcctagagatagcgaagaatagaaaaagttccacagtcacacaacaatcgaaaatcaattgggataaagtggataaagaa aaatacagggaagtgctcagcactaatctacaaaaagcaaacttgaaccaagaaacaattgaagaaacaatagacgagct aacatcactgctgacgatgtcttcttcacagtgtcaaggaaaagcgaagaaaaagtgtacaaaacatagacttaaagtat ggaatgatgacatcaaagaagctgttagcagaagtaaaaaatctcattgggagttcaagaagctaaaggaaagtggcaat gttgatagtgcagtaattgaagaacgaaaaaatgcgaaacaggaccttcgtagacttataagaaacgaacagttgcggac agaggtagctaaaaaagagcagttaatgcaagcagagactaaagataggacaacattttatcgcataatacgtgagcaaa gaggttcgatcagcacaaaagtgtctgaaattcaggtgcaaaacaaagagtacaaagaagaacatctattagaaggatgg aatgtacattttgaacagatgtcgaatagcaacccagctccaacagacggagaatatacactccttgtagagggagatct agaaatcatcaaagatgtgcaaaacaaagagtacaaagaagagcatctattagaaggatggaatgtgcattttgaacaga tgtcgaatagcaacccagctccaacagacggagaatatacactccttgtagagggagatctagaaatcatcaaagatgta tgttcaaaagtgtataaaaagaaaggaagtaaaaccgaagcaaaaaactatcgtgggataactgtattacccgtgctagc aaaactcctggaaatcatagtacgtatccgaatacgcaaaatccttgaaccaaatcaaaattcgcttcagcgaggattta catcttcatcttcgccaatgaattgtgctcttataattgaggaatttgtccgagaatcaaaggatcaaaaatcaaaaacg tttctatcactactagatgcacgtgccgcatttgatatggtatggcattccagtcttctcaggaaattgtatctacaagg aattgaaggcaatctatggatacttattcaaaatatgcatgaagatatcaccagctgtgtgaaatggaacggtcagttct caaattcattcatgctaacacaaggagtaagacaagggggtacattaaggtcggatttctacaaactttacgtaaacacg ttattggataggatacaaaacacaggaatcggaggtcatattggtgacatcaactgcgctgcaccaacatgtgcggacaa catgtctcagcttagtactaaagagtctgagttacagatattatgtaatgttgctgaaaactacagtgtgatggaacact acgaactgcagccagcatag |
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Protein
| Protein ID | pfu_aug2.0_243.1_10492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10492.t1 MEVVNTGRPRRIRNPRNVYTPSKDSNNRIQMDYTLNKSKAIDQKLKAATRKENVEFILKGETLVLAFSAATYELYKTVIR TYFEKRTDRICVVVHEKASNTKCGENAIIEHSLSICEPSSNNQLYRMNFFHTTSKVTVNGERLELFMNEDCKNILKEVNG NTDITQLDKLIEEKCTKYLENLSINANRSSNPAMKESQKTTTTNAQNKGDHNSSHKMIIPHVVDKNNSAKDILNEETNVK VICIICDGDIAPIDHAMCDICGNHIHIQCCKNDEHNINLCLSCVAMEEQNVITKSDNSERTQSNESQSTSTHSINNVGSK NKNRKRSQEKMNSHTITTNNEPNKGVSNESTPVQQKKVKTSSTNTTSNNETKKVQQEETVTIKMRDLRLKENKLKKWEEE LKLKEQQLANIECDKVRLETYVLKLESKNQELENSIKILKRRIFETDRNQSSDSYNQENTNCANAYPPQQNQPVHMLVNK IHDKVTQFVLQKVDKQLDALLDTHDVSQSSAEIYCQQTASNQSDNVRTNCGTANIGNTFSHNVQPISQEWKYRTPHTTRY TNVQHDVSSHTNYRNVKTHPPSTDACDSESISEQSNCESTTNSLNIIKEDFNQEFLTVSLNICAFNCKNIMTSILAIEEI MKHTDILLIQEHWLFNYQLPVLNDLASQIRGIGKAVDDDNPISPIQKPRGYGGVAILWKDELDSKIEVLKDGSNRMQCIR VKTTSQPILLVSIYLPAKGCRTNPQDYLDCMDQLQEILDKYQDHHICIGGDFNEHLTTGNNSERIRCVRQLISDNQLQSL TYGSTFIHPNGKDSSEIDYFLVKTHSDIRVKKMDKMEGLETNTSDHHPIRCNLSLEIAKNRKSSTVTQQSKINWDKVDKE KYREVLSTNLQKANLNQETIEETIDELTSLLTMSSSQCQGKAKKKCTKHRLKVWNDDIKEAVSRSKKSHWEFKKLKESGN VDSAVIEERKNAKQDLRRLIRNEQLRTEVAKKEQLMQAETKDRTTFYRIIREQRGSISTKVSEIQVQNKEYKEEHLLEGW NVHFEQMSNSNPAPTDGEYTLLVEGDLEIIKDVQNKEYKEEHLLEGWNVHFEQMSNSNPAPTDGEYTLLVEGDLEIIKDV CSKVYKKKGSKTEAKNYRGITVLPVLAKLLEIIVRIRIRKILEPNQNSLQRGFTSSSSPMNCALIIEEFVRESKDQKSKT FLSLLDARAAFDMVWHSSLLRKLYLQGIEGNLWILIQNMHEDITSCVKWNGQFSNSFMLTQGVRQGGTLRSDFYKLYVNT LLDRIQNTGIGGHIGDINCAAPTCADNMSQLSTKESELQILCNVAENYSVMEHYELQPA |
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