Gene
| Gene Model ID | pfu_aug2.0_243.1_10497 |
|---|---|
| Locus | scaffold243.1 : 342756 ... 356879 : - |
| To GenomeBrowser | scaffold243.1:342756..356879 |
| Genes list of scaffold | scaffold243.1 |
| Synonym | pfu_aug1.0_1938.1_00905 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| double-strand-break repair protein rad21 homolog | GO:0000785 GO:0001228 GO:0005515 GO:0034991 GO:0044763 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_243.1_10497.t2 | 1 | 1 | Rad21_Rec8_N | 1 | 111 | 1.68156e-44 | 150.3 | 0.0 | 5.32493e-44 | 148.7 |
| pfu_aug2.0_243.1_10497.t2 | 2 | 1 | Rad21_Rec8 | 1 | 12 | 2.5e-14 | 52.1 | 0.22 | 1100.0 | -1.2 |
| pfu_aug2.0_243.1_10497.t2 | 2 | 1 | ScpA_ScpB | 49 | 81 | 3.5e-07 | 30.0 | 0.057 | 280.0 | 0.9 |
| pfu_aug2.0_243.1_10497.t2 | 2 | 2 | ScpA_ScpB | 423 | 506 | 3.5e-07 | 30.0 | 2.0e-10 | 9.8e-07 | 28.5 |
| pfu_aug2.0_243.1_10497.t2 | 2 | 2 | Rad21_Rec8 | 460 | 511 | 2.5e-14 | 52.1 | 2.3e-17 | 1.1e-13 | 50.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_243.1_10497.t2 | gi|594682571|ref|XP_007188864.1| | PREDICTED: double-strand-break repair protein rad21 homolog isoform X2 [Balaenoptera acutorostrata scammoni] | 0.0 |
| pfu_aug2.0_243.1_10497.t2 | gi|115762662|ref|XP_780787.2| | PREDICTED: double-strand-break repair protein rad21 homolog [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_243.1_10497.t2 | gi|632959586|ref|XP_007895705.1| | PREDICTED: double-strand-break repair protein rad21 homolog isoform X4 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_243.1_10497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10497.t1 atgaacaagacaagttggatctggaggcaaccgatatatctaatgctgaggaagcaagatctaaagacattcaatgcaga accggaattagacacagatcagatgccagaaaatcaagaacaagaagaaaaacagttaacaaaacggagtcaggttatgc aacattctttggatgtggcattcagatacaaagatgaactcagtttcaaagagatgtctcgttgcttaaatcgcaagcag gctgcatctaaattttatactctcctcgttctgaaaaaagctcaggccatagaagttcgacaaccagaagaatttggtga catttacataaacaaaggaccacagtttggcttgttgtga |
|
| Transcript ID | pfu_aug2.0_243.1_10497.t2 |
| Definition | - |
>pfu_aug2.0_243.1_10497.t2 atgttttacgcccattttgtgctgagcaagaaagggccattggcccgcatttggcttgctgctcattgggacaagaaatt gaccaaagcacatgtgtttgaaaccaatattgatagcagtgtggaggcaatcatgcagcctaaggttaaacttgctctga gaacatctggtcacctgctacttggtgttgtaagaatctattccagaaaagccaagtacctcctagcagactgcaatgaa gctttcgttaagattaagatggcctttcgacctggagtcgtcgatttaccagaagaaaatagagaggcagcaatggcagc gatcaccctacaagaaaacttccatgattttgaaacaacattagctgatctgaatgatttagacgtaccaacacacttca cagtaaaccaaagtagacctgaggagatcacgatgagggaagacttgtccagcattgcttttgttggtgatgatggattt ggtgatgttggccttgatgatcaggagctcaatagaggcgacagttatttggacgatcccctgtacaaagagaatagcat tgttcagatcgatgtgtcaaaggacaaggaaaaaaccctaaacgagactgccgagaaacccatggatatagatatgccgg ctccagcagaggcaaatgattttgatggcgttgttgatgatcatttcatgaatgatggagatgatgatgacgacgatgat aatgatgatggaggatttggtggtggtgtagaccaagagttctttgatacagagaagaatgaacaaagtacagtttcaag tgtttccgagaccactcagccaaccatgatcactgctggagccacagaacaaaccacactcatcagtaatgaggaggaag cctttgctctcccccctcttgacacaactcatgtctcgggtctacatggaacggaaaagaaaggaaaacgaaaaaggaaa ctgattgttgatgaacaaaaaggaattccgagtgaaacaatgaaactccagctgtcggacacgtcagatattatatccac attagacttggctccacccacaaagaaactgatgcaatggaaggaatctgggggtgtggaaaaattgtttgggttaccag gacgatctattgtatcaaaatcagtctcaaagcttttcacaagaaatctccacacaagggcagtaacagaagaagaggat gaacaagacaagttggatctggaggcaaccgatatatctaatgctgaggaagcaagatctaaagaaccggaattagacac agatcagatgccagaaaatcaagaacaagaagaaaaacagttaacaaaacggagtcaggttatgcaacattctttggatg tggcattcagatacaaagatgaactcagtttcaaagagatgtctcgttgcttaaatcgcaagcaggctgcatctaaattt tatactctcctcgttctgaaaaaagctcaggccatagaagttcgacaaccagaagaatttggtgacatttacataaacaa aggaccacagtttggcttgttgtga |
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Protein
| Protein ID | pfu_aug2.0_243.1_10497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_243.1_10497.t1 MNKTSWIWRQPIYLMLRKQDLKTFNAEPELDTDQMPENQEQEEKQLTKRSQVMQHSLDVAFRYKDELSFKEMSRCLNRKQ AASKFYTLLVLKKAQAIEVRQPEEFGDIYINKGPQFGLL |
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| Protein ID | pfu_aug2.0_243.1_10497.t2 |
| Definition | - |
>pfu_aug2.0_243.1_10497.t2 MFYAHFVLSKKGPLARIWLAAHWDKKLTKAHVFETNIDSSVEAIMQPKVKLALRTSGHLLLGVVRIYSRKAKYLLADCNE AFVKIKMAFRPGVVDLPEENREAAMAAITLQENFHDFETTLADLNDLDVPTHFTVNQSRPEEITMREDLSSIAFVGDDGF GDVGLDDQELNRGDSYLDDPLYKENSIVQIDVSKDKEKTLNETAEKPMDIDMPAPAEANDFDGVVDDHFMNDGDDDDDDD NDDGGFGGGVDQEFFDTEKNEQSTVSSVSETTQPTMITAGATEQTTLISNEEEAFALPPLDTTHVSGLHGTEKKGKRKRK LIVDEQKGIPSETMKLQLSDTSDIISTLDLAPPTKKLMQWKESGGVEKLFGLPGRSIVSKSVSKLFTRNLHTRAVTEEED EQDKLDLEATDISNAEEARSKEPELDTDQMPENQEQEEKQLTKRSQVMQHSLDVAFRYKDELSFKEMSRCLNRKQAASKF YTLLVLKKAQAIEVRQPEEFGDIYINKGPQFGLL |
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