Gene
| Gene Model ID | pfu_aug2.0_2438.1_28809 |
|---|---|
| Locus | scaffold2438.1 : 59476 ... 62548 : + |
| To GenomeBrowser | scaffold2438.1:59476..62548 |
| Genes list of scaffold | scaffold2438.1 |
| Synonym | pfu_aug1.0_60437.1_56292 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2438.1_28809.t1 | 1 | 1 | C1q | 193 | 308 | 5.6e-20 | 71.6 | 1.0e-22 | 1.1e-19 | 70.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2438.1_28809.t1 | gi|736165690|ref|XP_010764428.1| | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104941084 [Notothenia coriiceps] | 8.0e-11 |
| pfu_aug2.0_2438.1_28809.t1 | gi|602652290|ref|XP_007432518.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 3 isoform X1 [Python bivittatus] | 3.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_2438.1_28809.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2438.1_28809.t1 atgggtctgttcaggttacacgttttccttctgtgtatcattttctcatcagcatctgaaatcgtcttaaaagctgaata cgatcaagaaataaggaaaatatatgagaagttggagaaacttgatgagctgcaatatgagttggacgagacgaggaaag aaaataagattttgaaagacaatgttcagattttacaaaaagagaatctgagaattcaaggaactatagtatcttttgaa agcagatgtcgtaagcttgaacttaacgtgaatgagttgaggaaggatagaaatgaaatacaaactaaatcaaaattaca caggaacatgaattcaaacctcgaaaaaacgccagataattcaaatcctgttggattgtttggttcttcgcaacagcctg gaaatacatcggattttgtatctaaaacaataaaggattccacagtaaacacaaaagaaaacagatcactcaataaagtt cgccgattactcatgggtagcagttctccgtctcccactgtgatacctaaacaaaacagcataggtttctttgcatacaa cccaagctatcaagaaaatcttggtattcatcagacggtggagttccctacagcacttactaatataggatctgcttata gtaccttacatagcatctttagcgctcctgttgacggtctttactatttctccgtcaccataatgagttttcacggggag gatatattggcagagatagtacataatggtaatggtatggcgtacacgtactctggtagtgagacaatgtatggctctgg atcaacatcagctgtccttcaactccatgccaacgacgatgtgtggataaggatacttgacaacgctcttaatgatggta acataagagtttatgcaagcaaatggtcttcgttttgtggattcaaaatcgcataa |
|
Protein
| Protein ID | pfu_aug2.0_2438.1_28809.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2438.1_28809.t1 MGLFRLHVFLLCIIFSSASEIVLKAEYDQEIRKIYEKLEKLDELQYELDETRKENKILKDNVQILQKENLRIQGTIVSFE SRCRKLELNVNELRKDRNEIQTKSKLHRNMNSNLEKTPDNSNPVGLFGSSQQPGNTSDFVSKTIKDSTVNTKENRSLNKV RRLLMGSSSPSPTVIPKQNSIGFFAYNPSYQENLGIHQTVEFPTALTNIGSAYSTLHSIFSAPVDGLYYFSVTIMSFHGE DILAEIVHNGNGMAYTYSGSETMYGSGSTSAVLQLHANDDVWIRILDNALNDGNIRVYASKWSSFCGFKIA |
|