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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2438.1_28809
Locus scaffold2438.1 : 59476 ... 62548 : +
To GenomeBrowser scaffold2438.1:59476..62548
Genes list of scaffold scaffold2438.1
Synonym pfu_aug1.0_60437.1_56292

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2438.1_28809.t1 1 1 C1q 193 308 5.6e-20 71.6 1.0e-22 1.1e-19 70.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2438.1_28809.t1 gi|736165690|ref|XP_010764428.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104941084 [Notothenia coriiceps] 8.0e-11
pfu_aug2.0_2438.1_28809.t1 gi|602652290|ref|XP_007432518.1| PREDICTED: complement C1q tumor necrosis factor-related protein 3 isoform X1 [Python bivittatus] 3.0e-10

Transcript
Transcript IDpfu_aug2.0_2438.1_28809.t1
Definition-
>pfu_aug2.0_2438.1_28809.t1
atgggtctgttcaggttacacgttttccttctgtgtatcattttctcatcagcatctgaaatcgtcttaaaagctgaata
cgatcaagaaataaggaaaatatatgagaagttggagaaacttgatgagctgcaatatgagttggacgagacgaggaaag
aaaataagattttgaaagacaatgttcagattttacaaaaagagaatctgagaattcaaggaactatagtatcttttgaa
agcagatgtcgtaagcttgaacttaacgtgaatgagttgaggaaggatagaaatgaaatacaaactaaatcaaaattaca
caggaacatgaattcaaacctcgaaaaaacgccagataattcaaatcctgttggattgtttggttcttcgcaacagcctg
gaaatacatcggattttgtatctaaaacaataaaggattccacagtaaacacaaaagaaaacagatcactcaataaagtt
cgccgattactcatgggtagcagttctccgtctcccactgtgatacctaaacaaaacagcataggtttctttgcatacaa
cccaagctatcaagaaaatcttggtattcatcagacggtggagttccctacagcacttactaatataggatctgcttata
gtaccttacatagcatctttagcgctcctgttgacggtctttactatttctccgtcaccataatgagttttcacggggag
gatatattggcagagatagtacataatggtaatggtatggcgtacacgtactctggtagtgagacaatgtatggctctgg
atcaacatcagctgtccttcaactccatgccaacgacgatgtgtggataaggatacttgacaacgctcttaatgatggta
acataagagtttatgcaagcaaatggtcttcgttttgtggattcaaaatcgcataa

Protein
Protein IDpfu_aug2.0_2438.1_28809.t1
Definition-
>pfu_aug2.0_2438.1_28809.t1
MGLFRLHVFLLCIIFSSASEIVLKAEYDQEIRKIYEKLEKLDELQYELDETRKENKILKDNVQILQKENLRIQGTIVSFE
SRCRKLELNVNELRKDRNEIQTKSKLHRNMNSNLEKTPDNSNPVGLFGSSQQPGNTSDFVSKTIKDSTVNTKENRSLNKV
RRLLMGSSSPSPTVIPKQNSIGFFAYNPSYQENLGIHQTVEFPTALTNIGSAYSTLHSIFSAPVDGLYYFSVTIMSFHGE
DILAEIVHNGNGMAYTYSGSETMYGSGSTSAVLQLHANDDVWIRILDNALNDGNIRVYASKWSSFCGFKIA

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