Gene
Gene Model ID | pfu_aug2.0_2438.1_28811 |
---|---|
Locus | scaffold2438.1 : 85095 ... 95875 : - |
To GenomeBrowser | scaffold2438.1:85095..95875 |
Genes list of scaffold | scaffold2438.1 |
Synonym | pfu_aug1.0_24452.1_33435 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2438.1_28811.t1 | 3 | 1 | zf-B_box | 75 | 82 | 5.4e-07 | 29.4 | 0.44 | 6500.0 | -2.9 |
pfu_aug2.0_2438.1_28811.t1 | 3 | 2 | zf-B_box | 121 | 166 | 5.4e-07 | 29.4 | 3.8e-08 | 0.00057 | 19.7 |
pfu_aug2.0_2438.1_28811.t1 | 3 | 3 | zf-B_box | 183 | 215 | 5.4e-07 | 29.4 | 5.8e-09 | 8.7e-05 | 22.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2438.1_28811.t1 | gi|585653364|ref|XP_006815101.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 5.0e-12 |
Transcript
Transcript ID | pfu_aug2.0_2438.1_28811.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2438.1_28811.t1 atggacagggtgaaagggaggcgggagaaagggggcgggaggaggttgaaagggagaagggagggaagagagaaaaatgg gagggaggggcgggtggagggagagaaggggtgggaggcgggaggtaagggaagggagggtgaaaaggagggggaaggag gtggcggcgggaggggggagcaattcatcaatagaaccgacaaagaggacaaaacagagacgatgtttctttgtccaata tgccgttgcgtaatcaatgtcccctgtgaaagtaaacatgattccagtgaaattgccagccgttttccgaccaatcattt gattgtaactttaatggattcaaactttctacacgactctaaaaacgtttgtggaccctgtcataagagatcgatagaag ccgaagccgtatcttggtgcattgaatgcaaatctttcctttgccagcaatgccttgaataccattccactttgccagtt ctagagacacatagcacaggacctctgaaagatgcccagtggttgaaagatggaatgtcttcttccttatactgcaaaac tcacccggagaaacgtttagagatgtattgtgaagatcatgagctcccatgttgtttgacatgtactatgattgatcata gacggtgtgaaaaagtcgatacactggaaaatgcatcaaaaagtgtaaaggcatccaaattaaaagacgaaatggaggtc aaacttgatggggaaatgaaaagggtaagggagaaactgagctctaagaaggcagacgaaaaacacctcttagaaaattg taaagaaattgaattatcaattgaaaatacaacagaacgtttgactgtgcatctgaaaaagttatcgacgaaggccttgc atgaattatcagaactccaagagaagcataggaatatcattctttctgacattgaatttatggaagaacgaaaacgtact atagaaaactatcaaacattacttcaggtgagcaagggcaaactatccaacgtacagttcttcctagaggctcaacgcct taaaggattatttgacagaggaattgaatttgggagtatgaaacaatccatagaaatgaagaaaacaccacggttcgaaa cagaaggcaatattctagatctcctgacggttgaagcatttgggaggatatgttttgccgaaatagtcgaggaattagaa gagaaaaagaaaagagaatttatagagggatccaataaacagacaaaagacacaaaaggggggacagatgattcaaaaat tcaagaaatcggtgggagttcattttgttcgaacaacaaagaggatgtagaagaagcaaacggaaacaagaaagacaaga aagatgtttgtggaaacgagccgcttgcacaaaacgaaacgtatattccttggcattgcgaactactgaaaaaggtcacc ttaaacacatcaaataacaattctgccgtgcacaactgcctgtttcttgatgatggacgtctagtgactgttgattacaa ggtgcgggactcaaaagacggaattataaagatctttgatcatgacttcgaaacctttaaaacggttcgtattcgaggca agccatgggctgccatagcattaaactctcaagtcttagctcttactattccttctcgtgacgagttgtgctttatggaa attgattcgttaagaaaaatataccaagattgtgacagaaaatatttcggtctagcccttaaggataaattgacaccagt ttataatcccttgggtaatcttaacgatgaaaagtgtacatttttcgtgacgtcaaagggaaatgtgtacttgagaacag ttactggtgtgatcttgatgcaagtgtctttgtccaaacgatatgtgcgcaatatctactacatacaggaccgtgtgtat ttcatggatgaccaagcacttgggtgttttcagctacacaggggattcctttttcaataccgagatgacgataaaagaag catgtcaggactagcattttacaaaccaaatgatgaagtagtcatctgtggagaagataacggcgatatttctgtcataa aattagacaaggatggaaataaaaaagcagaagaagaactagattgcgatgactcgtgcagttgggattctgattctaat gatggctctgattcttcagatggagatggattatcggaaccaaccggtttggcttttagctcaacatatgacaaactttg cattgtggacgggggtgatgtcgcgttcgtttactcaatcaaagcgggctcctattga |
Protein
Protein ID | pfu_aug2.0_2438.1_28811.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2438.1_28811.t1 MDRVKGRREKGGGRRLKGRREGREKNGREGRVEGEKGWEAGGKGREGEKEGEGGGGGRGEQFINRTDKEDKTETMFLCPI CRCVINVPCESKHDSSEIASRFPTNHLIVTLMDSNFLHDSKNVCGPCHKRSIEAEAVSWCIECKSFLCQQCLEYHSTLPV LETHSTGPLKDAQWLKDGMSSSLYCKTHPEKRLEMYCEDHELPCCLTCTMIDHRRCEKVDTLENASKSVKASKLKDEMEV KLDGEMKRVREKLSSKKADEKHLLENCKEIELSIENTTERLTVHLKKLSTKALHELSELQEKHRNIILSDIEFMEERKRT IENYQTLLQVSKGKLSNVQFFLEAQRLKGLFDRGIEFGSMKQSIEMKKTPRFETEGNILDLLTVEAFGRICFAEIVEELE EKKKREFIEGSNKQTKDTKGGTDDSKIQEIGGSSFCSNNKEDVEEANGNKKDKKDVCGNEPLAQNETYIPWHCELLKKVT LNTSNNNSAVHNCLFLDDGRLVTVDYKVRDSKDGIIKIFDHDFETFKTVRIRGKPWAAIALNSQVLALTIPSRDELCFME IDSLRKIYQDCDRKYFGLALKDKLTPVYNPLGNLNDEKCTFFVTSKGNVYLRTVTGVILMQVSLSKRYVRNIYYIQDRVY FMDDQALGCFQLHRGFLFQYRDDDKRSMSGLAFYKPNDEVVICGEDNGDISVIKLDKDGNKKAEEELDCDDSCSWDSDSN DGSDSSDGDGLSEPTGLAFSSTYDKLCIVDGGDVAFVYSIKAGSY |