Gene
| Gene Model ID | pfu_aug2.0_244.1_13856 |
|---|---|
| Locus | scaffold244.1 : 5535 ... 16645 : - |
| To GenomeBrowser | scaffold244.1:5535..16645 |
| Genes list of scaffold | scaffold244.1 |
| Synonym | pfu_aug1.0_6647.1_60072 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon alpha-inducible protein 27-like protein 2a | GO:0000122 GO:0001102 GO:0005521 GO:0005637 GO:0005739 GO:0006919 GO:0032355 GO:0034097 GO:0046825 GO:0060135 GO:0097190 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_244.1_13856.t1 | 1 | 1 | Ifi-6-16 | 131 | 206 | 3.8e-19 | 68.2 | 3.7e-23 | 5.5e-19 | 67.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_244.1_13856.t1 | gi|557288793|ref|XP_006027061.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2B-like isoform X1 [Alligator sinensis] | 9.0e-12 |
| pfu_aug2.0_244.1_13856.t1 | gi|548534679|ref|XP_005701808.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2-like [Capra hircus] | 2.0e-10 |
| pfu_aug2.0_244.1_13856.t1 | gi|594074003|ref|XP_006060809.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2-like isoform X1 [Bubalus bubalis] | 3.0e-10 |
| pfu_aug2.0_244.1_13856.t1 | gi|742102501|ref|XP_010834532.1| | PREDICTED: interferon alpha-inducible protein 27, mitochondrial-like isoform X4 [Bison bison bison] | 4.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_244.1_13856.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13856.t1 atgagaaacaattcttctctgacgagatttagaaatgtcaccttccgtagtcccgacttcacgattgtgtccggatacgt tgactcagaaaaagaaaatggcaaatgtctttcgtctattgattgctgcaggtttactgtataccgcctagaaaggctac atgtatataaaaggaatatgctgtctgaaaaatgtaagaaaggaggggatctccgacaacacctagttgcagcaccacta gcaaaaccccaaaacacccaatcgatgcttaaaaacacagagcagacacgcacagaaagagacgcaattggtgaagatga ccctcagaattcattttatgaagatgctctgagttatgcccaaaaacatgtaatagtcgggtttgttacagtagccgccg tacgcgtgatattagccgtgatattgtcaatcattggatttactccagatggtattgccgctggctctttagccgccaca ttaatgtcgattgctgcaatagcaaatggtggttttcttcttgcgggtactttggtgccaatgcttcaatctgcgggagc cgttggtttagggtcaagagctcaactaggaatagggattgcagtgacattggtatcctggtatttcacttaa |
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Protein
| Protein ID | pfu_aug2.0_244.1_13856.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13856.t1 MRNNSSLTRFRNVTFRSPDFTIVSGYVDSEKENGKCLSSIDCCRFTVYRLERLHVYKRNMLSEKCKKGGDLRQHLVAAPL AKPQNTQSMLKNTEQTRTERDAIGEDDPQNSFYEDALSYAQKHVIVGFVTVAAVRVILAVILSIIGFTPDGIAAGSLAAT LMSIAAIANGGFLLAGTLVPMLQSAGAVGLGSRAQLGIGIAVTLVSWYFT |
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