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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_244.1_13862
Locus scaffold244.1 : 156233 ... 170031 : +
To GenomeBrowser scaffold244.1:156233..170031
Genes list of scaffold scaffold244.1
Synonym pfu_aug1.0_3113.1_23185

Manual annotation
Annotation by Blast2GO
Annotation GO
trna wybutosine-synthesizing protein 5 GO:0000049 GO:0005506 GO:0016706 GO:0031591 GO:0042803 GO:0055114

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_244.1_13862.t1 1 1 Cupin_8 3 232 4.1058e-43 147.6 0.0 5.70328e-43 147.2
pfu_aug2.0_244.1_13862.t1 1 1 Cupin_4 94 222 4.2e-08 32.7 2.6e-11 9.5e-08 31.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_244.1_13862.t1 gi|597059706|gb|AHN05306.1| 0.0
pfu_aug2.0_244.1_13862.t1 gi|564249234|ref|XP_006263697.1| PREDICTED: tRNA wybutosine-synthesizing protein 5 [Alligator mississippiensis] 0.0
pfu_aug2.0_244.1_13862.t1 gi|557294790|ref|XP_006029824.1| PREDICTED: tRNA wybutosine-synthesizing protein 5 [Alligator sinensis] 0.0
pfu_aug2.0_244.1_13862.t1 gi|612020323|ref|XP_007494639.1| PREDICTED: tRNA wybutosine-synthesizing protein 5 isoform X2 [Monodelphis domestica] 0.0
pfu_aug2.0_244.1_13862.t1 gi|530647582|ref|XP_005310390.1| PREDICTED: tRNA wybutosine-synthesizing protein 5 isoform X2 [Chrysemys picta bellii] 0.0

Transcript
Transcript IDpfu_aug2.0_244.1_13862.t1
Definition-
>pfu_aug2.0_244.1_13862.t1
atgtcaagcagaattccaacagtgcttcaaggattagacattggttcttgtgttcagaagtggagttctctggaatatct
gatgaaaaatggaggaaacaagcaagtcaaaatccatgtgtcagaatcacctcagatggattttatcaacaaaaactttg
tttacaggtcacttccatttgatgatttcgtgagaagagcatctgaaaagacccactcagaatacttcatatcagaaaca
gaaaattactaccttcgagcccttggagatgacccccggagagagatagctgacatacactcccagttccccacccttgc
acaagatgtcaaatttcctgaccttttccccagggagaaatttttctccagcgtatttaggatagcatcagagggacttc
agctctggacacattatgatattatggacaatttcctgatgcaaataagtgggaggaagaaggttgtattatttagtcct
gatgatgtgaactacttgtatcttaatggtgataaatcagaggtccttgatgtggacaatccagacactgataaatttcc
tgatttctacaaagctcagaaacatgtgtgcttcttagagccaggggacgttttatttataccagccttatggttccata
atgtgatatccctcgactttggagtggcagttaatgtattctggaagcaccttgattcacagttctatgacagcaaggac
acgtatggaaacaaagacctactaccagcaactcgtgccacacagatcattgagagggccgtcaaaactctggaagagtt
accagaatactataggacattttatgctcgacagcttatcagcagaatagagaaaaaattctatgacagcaaggacacgt
atggaaacaaagacttactaccagcaactcgtgccacacagatcattgacagggccgtcaaaactcttgaagagttacca
gaatactataggacattttatgctcgacagcttatcagcagaatagagaaaaaatgcaaatggatgaaactagctttaga
tgcaaaagcgatgtattatatcatcgctttagtgcaaatggtaatgttcacgggaaagggagggcagacgtatcaagtaa
aggccagctatagatttaaaattagtaaacaaaagtacacgtatttcaacatttattag

Protein
Protein IDpfu_aug2.0_244.1_13862.t1
Definition-
>pfu_aug2.0_244.1_13862.t1
MSSRIPTVLQGLDIGSCVQKWSSLEYLMKNGGNKQVKIHVSESPQMDFINKNFVYRSLPFDDFVRRASEKTHSEYFISET
ENYYLRALGDDPRREIADIHSQFPTLAQDVKFPDLFPREKFFSSVFRIASEGLQLWTHYDIMDNFLMQISGRKKVVLFSP
DDVNYLYLNGDKSEVLDVDNPDTDKFPDFYKAQKHVCFLEPGDVLFIPALWFHNVISLDFGVAVNVFWKHLDSQFYDSKD
TYGNKDLLPATRATQIIERAVKTLEELPEYYRTFYARQLISRIEKKFYDSKDTYGNKDLLPATRATQIIDRAVKTLEELP
EYYRTFYARQLISRIEKKCKWMKLALDAKAMYYIIALVQMVMFTGKGGQTYQVKASYRFKISKQKYTYFNIY

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