Gene
| Gene Model ID | pfu_aug2.0_244.1_13869 |
|---|---|
| Locus | scaffold244.1 : 362414 ... 372378 : + |
| To GenomeBrowser | scaffold244.1:362414..372378 |
| Genes list of scaffold | scaffold244.1 |
| Synonym | pfu_aug1.0_4795.1_23661 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein strawberry notch homolog 1 isoform x1 | GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_244.1_13869.t1 | 1 | 1 | AAA_34 | 452 | 545 | 5.3e-37 | 127.2 | 6.09999e-41 | 9.1e-37 | 126.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_244.1_13869.t1 | gi|742124085|ref|XP_010875701.1| | PREDICTED: protein strawberry notch homolog 1 isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_244.1_13869.t1 | gi|556955058|ref|XP_005989076.1| | PREDICTED: protein strawberry notch homolog 1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_244.1_13869.t1 | gi|742124101|ref|XP_010875705.1| | PREDICTED: protein strawberry notch homolog 1 isoform X3 [Esox lucius] | 0.0 |
| pfu_aug2.0_244.1_13869.t1 | gi|260834233|ref|XP_002612116.1| | hypothetical protein BRAFLDRAFT_153828 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_244.1_13869.t1 | gi|585685404|ref|XP_006820130.1| | PREDICTED: protein strawberry notch homolog 1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_244.1_13869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13869.t1 atgcaaaatgcattcacagacatactatctgctgctttagatgagtcagggattacaggagattttgaggaggagtttca agatgacggacagcatggaatttacaatcaacaagcgggcgtgatcggtagccctccagtgtacacgggtcatcaacaaa gcctgattcctgggcaggtctataatggaggtctgtctagtggcgttatccctagtcaagtacaacaagatctcgtgccg ggacaaggtgacgtcttttctcaggctcttaaaaacctagcatcttcaggagctgcatcggccaatcagtatggtttgcc agcaacaggaaggcaagagggtgaaggtcatgcagggatacatcgatcagcctcgtcacctgccatcatacgtatcccag catcctctctgcaaaaactggaaaaaagtacaaatggaattaaagtgcagactagtcagggtacaatccctcttcaggga ggcaccagaatcattaaaatcacccgtgttgggaataaacaaacaacaagtgctattaaactgccagcatctgctagcac cattaatttgaagaattctaataccacagcggtgaaacttggaagttttgtgacgaaaactccaaacagcaattctcaga cagttaatgtggcgtcaactacgaacaatgcctcaagcgctcagggcatcaatttttcagacttggtgaagtccacaact acaagtggacaaacaatcaacctatcaaatctcgtctccagatatccacaaactggtgctcggacgataaatctagcaga tttagcatccgcaagggggaaaagaatcgtgatttcctctacgtcaggaaacgcatcaatttctaatctgccgagtgtca tatcctctgggaacactacgttgaattctaccagagtcggaccaaatccgtttttacgtgaaagctcccccatcatgcgg tcagactcgcctgtgcaatttatgggatatacaagacctaacgatcatgtgcgagaaaactcgatctctttacttcacaa cggacctggttcatttcatcacagtgcgtcaacgcctgcaatgtcgtcgttcatggcacataactctaataatagaatac ctaacgatgggattgcggcaattaaaactaatctcactcaaaaagacgtgtctaggttgtggtcaaatgaggatgtgaaa ttacggaattatggaccagctgtgcagcagatgtccaagcagcaattattgggaggaggttttgaggaggaggaggtgga tgatgctgaagcagaggagcttggccatgccgagacatataatgaatatatgcctactaaattatccattggtatcaagc atcctgaccctgtggtagagaccagttccctcgccagtgtggaacctcccaacatctggtataaactatccatcccagag aacatcatagatgagggggagctctcggcactccagttagagtccattacttacgcctcacagaggcatgaggttgtaat ggctagcggagagaggggcggcttccttataggtgacggtgctggtgtaggtaaaggtagaacgattgcaggaataatct acgaaaactatctgctgggacgcaaacgtgctttatgttcaaatatgccaagatctcatccaaagaaaacggcagtgtga |
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Protein
| Protein ID | pfu_aug2.0_244.1_13869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13869.t1 MQNAFTDILSAALDESGITGDFEEEFQDDGQHGIYNQQAGVIGSPPVYTGHQQSLIPGQVYNGGLSSGVIPSQVQQDLVP GQGDVFSQALKNLASSGAASANQYGLPATGRQEGEGHAGIHRSASSPAIIRIPASSLQKLEKSTNGIKVQTSQGTIPLQG GTRIIKITRVGNKQTTSAIKLPASASTINLKNSNTTAVKLGSFVTKTPNSNSQTVNVASTTNNASSAQGINFSDLVKSTT TSGQTINLSNLVSRYPQTGARTINLADLASARGKRIVISSTSGNASISNLPSVISSGNTTLNSTRVGPNPFLRESSPIMR SDSPVQFMGYTRPNDHVRENSISLLHNGPGSFHHSASTPAMSSFMAHNSNNRIPNDGIAAIKTNLTQKDVSRLWSNEDVK LRNYGPAVQQMSKQQLLGGGFEEEEVDDAEAEELGHAETYNEYMPTKLSIGIKHPDPVVETSSLASVEPPNIWYKLSIPE NIIDEGELSALQLESITYASQRHEVVMASGERGGFLIGDGAGVGKGRTIAGIIYENYLLGRKRALCSNMPRSHPKKTAV |
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