Gene
| Gene Model ID | pfu_aug2.0_244.1_13870 |
|---|---|
| Locus | scaffold244.1 : 372494 ... 388240 : + |
| To GenomeBrowser | scaffold244.1:372494..388240 |
| Genes list of scaffold | scaffold244.1 |
| Synonym | pfu_aug1.0_4795.1_23661 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_244.1_13870.t1 | 2 | 1 | AAA_34 | 1 | 43 | 6.8e-14 | 51.3 | 4.6e-17 | 1.7e-13 | 50.0 |
| pfu_aug2.0_244.1_13870.t1 | 1 | 1 | Helicase_C_4 | 395 | 670 | 0.0 | 368.5 | 0.0 | 0.0 | 367.9 |
| pfu_aug2.0_244.1_13870.t1 | 2 | 1 | Helicase_C | 404 | 420 | 9.3e-06 | 25.4 | 2.4 | 9000.0 | -3.4 |
| pfu_aug2.0_244.1_13870.t1 | 2 | 2 | Helicase_C | 448 | 506 | 9.3e-06 | 25.4 | 1.1e-08 | 4.0e-05 | 23.3 |
| pfu_aug2.0_244.1_13870.t1 | 2 | 2 | AAA_34 | 606 | 653 | 6.8e-14 | 51.3 | 0.83 | 3100.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_244.1_13870.t1 | gi|676455488|ref|XP_009054022.1| | hypothetical protein LOTGIDRAFT_117101, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_244.1_13870.t1 | gi|675626218|ref|XP_008941431.1| | PREDICTED: protein strawberry notch homolog 1, partial [Merops nubicus] | 0.0 |
| pfu_aug2.0_244.1_13870.t1 | gi|119618808|gb|EAW98402.1| | sno, strawberry notch homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] | 0.0 |
| pfu_aug2.0_244.1_13870.t1 | gi|117938837|gb|AAH27253.1| | Sbno1 protein, partial [Mus musculus] | 0.0 |
| pfu_aug2.0_244.1_13870.t1 | gi|166233534|sp|Q5BJL5.2|SBNO1_RAT | Protein strawberry notch homolog 1 | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_244.1_13870.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13870.t1 atggagttggttgccatggatatgaagcttagaggaatgtatatcgctcggcagctcagctttaagggagtgtccttcaa agtcgacgaaatatcgctggaggaagaatttgtgaagatgtacaatgagagtgtcaaaatgtgggtaacggcacgagaaa gatttcacaaggcagctcagctgattgacgcagaacaacgtatgaagaaaagcatgtggggtcagttctggtcggcacat caacgattcttcaagtatctgtgtatatcagccaaggttaaccactgtgtaaggatagctagagaagctgtcaaaaatgg gaagtgtgttgtgataggcctgcagtcgacaggggaggcgagaacattggagcagttagaggaacaagggggagaactca atgactttgtctctactgcaaaaggggtgttccaaactttggtagagaagcattttccggcccctgacaggaagaaaacg tttgatatttttggtctcagcagctataaaagttacacaaaggaggagtcagccccagcatctcctatgaacaacaagag aaagaaagaacaaacgaacaatcacaaagccaagaaatccaaacccagtcattcctcaggagaaagcggatccgaatcct cagactccggatccgatataagtgaccttgactttgatgaagccagtgaaaattccgacagcgatccagacgatttcaac ccgttcggaaatgactcggatagtgatgaagatccatggttgaaaaagaagcaaaacaaacagaaaccaaaaaatcataa aaagaaaaagaagaaatcaaaaggagttgattttgacgaggaatttgacaaagctttagctgcggcaggcctannnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaagaagaataatccaatcaaagaaagtaa tggtagtacagtcaatggtgggaatgtccaacccaagaaagaggaagactctttgtacagtatggatgctgtagaacagg ctatggccatgaagagagagttactggacttgttagaggaggtcggcgacaatctgccacccaacaccctggatcatctg atagacgagttagggggaccagagaacgtggcggaaatgacagggagaaaggggcgtgttgtttgtacagacgagggaat taactacgagtcgcggagtgagacggacgtaccactggaaatccttaacttgacagaaaagcagaggtttatggatggag aaaagaatgttgccataatatcagaggctgccagttcaggtatatcgttacaagccgacagacgggcgataaatcagcgt aggcgtgttcacatcacactagagttaccatggagtgcagacagggctatacaacagtttggtagaacacacaggtctaa ccaagtgaatgctccagaatacagtttcctgatctcagagttagctggtgaacagagattcgcttcaactgtggcaaaaa gactggagagcttgggagctttaacacatggagatagacgagccacagaatccagagatctcagccggtttaactttgat aacaaatacggtagagcagctctagagagtgtaatgaagtccctagtaggatatgaagccccgcttgtatctcttccaaa aacatacaaaggagacttcatggaagacgtaaagaaagccttagctggagttggtattataacattggatgacacactgt cgttccccatgttagataaagattacaacaacatcagtaagttcctgaacaggatcctgggtatggaggtacagcttcag aacgctttgtttctgtatttctctaacacactcacttccattatcctggaggccaagagaagtggccgatgggacctggg aatccttgacctcgggtcagggggagagagcgtcaagaaactggagaccaagacttttgtcggcagcacgtctgctaaca cagccaggacggaactaactacagtgtcaatagagagaggcatgtcgtggggccaggctatagatatatggagaaagtac actggactggaggatggtttctatgtctcactgtcggatagaaatttgaagaagacagcagtactggcggtatatcacgg cacaaataagaagaaagagaagttatttaatgtctacagaccaaacactggacgtcagctgcacaccgaatctctggaaa acctcaaaaagaaatacaaaaagtgcgagatcggcctacgtacccgtacgtttcacattctcagtggctctgtactaagc gtgtggagtaaggtagagagcgtgttagcggccatgcctgggggtacggcatcaaagatgcagatcatccgtatcagaac ggactgtggtcagaggatcgtagttactttagatggaaagctcatcctgtgttaa |
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Protein
| Protein ID | pfu_aug2.0_244.1_13870.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13870.t1 MELVAMDMKLRGMYIARQLSFKGVSFKVDEISLEEEFVKMYNESVKMWVTARERFHKAAQLIDAEQRMKKSMWGQFWSAH QRFFKYLCISAKVNHCVRIAREAVKNGKCVVIGLQSTGEARTLEQLEEQGGELNDFVSTAKGVFQTLVEKHFPAPDRKKT FDIFGLSSYKSYTKEESAPASPMNNKRKKEQTNNHKAKKSKPSHSSGESGSESSDSGSDISDLDFDEASENSDSDPDDFN PFGNDSDSDEDPWLKKKQNKQKPKNHKKKKKKSKGVDFDEEFDKALAAAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXLKKNNPIKESNGSTVNGGNVQPKKEEDSLYSMDAVEQAMAMKRELLDLLEEVGDNLPPNTLDHL IDELGGPENVAEMTGRKGRVVCTDEGINYESRSETDVPLEILNLTEKQRFMDGEKNVAIISEAASSGISLQADRRAINQR RRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYSFLISELAGEQRFASTVAKRLESLGALTHGDRRATESRDLSRFNFD NKYGRAALESVMKSLVGYEAPLVSLPKTYKGDFMEDVKKALAGVGIITLDDTLSFPMLDKDYNNISKFLNRILGMEVQLQ NALFLYFSNTLTSIILEAKRSGRWDLGILDLGSGGESVKKLETKTFVGSTSANTARTELTTVSIERGMSWGQAIDIWRKY TGLEDGFYVSLSDRNLKKTAVLAVYHGTNKKKEKLFNVYRPNTGRQLHTESLENLKKKYKKCEIGLRTRTFHILSGSVLS VWSKVESVLAAMPGGTASKMQIIRIRTDCGQRIVVTLDGKLILC |
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