Gene
| Gene Model ID | pfu_aug2.0_245.1_17168 |
|---|---|
| Locus | scaffold245.1 : 73346 ... 88958 : + |
| To GenomeBrowser | scaffold245.1:73346..88958 |
| Genes list of scaffold | scaffold245.1 |
| Synonym | pfu_aug1.0_9595.1_17520 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon regulatory factor 8 | GO:0000975 GO:0002376 GO:0003700 GO:0006355 GO:0010557 GO:0019538 GO:0031328 GO:0044707 GO:0044763 GO:0051239 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_245.1_17168.t1 | 1 | 1 | IRF | 10 | 69 | 8.9e-16 | 57.6 | 2.4e-19 | 1.8e-15 | 56.6 |
| pfu_aug2.0_245.1_17168.t1 | 2 | 1 | IRF-3 | 180 | 261 | 8.3e-23 | 80.8 | 4.2e-17 | 3.1e-13 | 49.6 |
| pfu_aug2.0_245.1_17168.t1 | 2 | 2 | IRF-3 | 300 | 383 | 8.3e-23 | 80.8 | 7.3e-11 | 5.4e-07 | 29.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_245.1_17168.t1 | gi|684382745|ref|XP_009167328.1| | hypothetical protein T265_13483, partial [Opisthorchis viverrini] | 6.0e-22 |
| pfu_aug2.0_245.1_17168.t1 | gi|676487143|ref|XP_009064199.1| | hypothetical protein LOTGIDRAFT_85054, partial [Lottia gigantea] | 4.0e-21 |
| pfu_aug2.0_245.1_17168.t1 | gi|617392585|ref|XP_007549927.1| | PREDICTED: interferon regulatory factor 8 [Poecilia formosa] | 2.0e-20 |
| pfu_aug2.0_245.1_17168.t1 | gi|658843506|ref|XP_008404148.1| | PREDICTED: interferon regulatory factor 8 [Poecilia reticulata] | 3.0e-20 |
| pfu_aug2.0_245.1_17168.t1 | gi|551506954|ref|XP_005805008.1| | PREDICTED: interferon regulatory factor 8-like [Xiphophorus maculatus] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_245.1_17168.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_245.1_17168.t1 atgggcaatcggtgccggcttaggacggccatctgccacgaatgggctattcacacgggcagatacagggagggtgtaga cgcttcggactatcccacatggaaaacacgttttcgctgcgcacttaacaaattaccggatattcaagaagtaaaaacat tcagcaaattggacggaccggaaccattccgggcatacagatttttgactcgtgaagaactcatagaaataaaggcaagg atgggagaaaataggatgagctttgatttaacagacataccacggccaatagaggacaagtcgtcgcccttgccagatat tgtcaataatctgccgcaaggggcgatgtcgacacaacagactttcaatctcccgaatcttccatcagacttgaacgaaa tcaacattgaacccttcaaatcggatagcctgaattctattaaacaggaaccaatggatacagaggccgcggatgtacaa ggtcccggaagacatgtccagacactgctgaataacaacggacaagatccattcccttacgaactgagaatacaagtaag atactgtgctaaagaggtgctggaccgtactgttaggaaccctaacgggtgccgtctgtactatggtcaacaagtggaac ctcccattcctttactacaacaagagatatacggtaacccggatgcagatcagatccattttccgtcatgcaagagtcca aataactttgcacaggagcgacatactcaggatctcctgtgcgctttcgaaagaggcctgcnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnntgattgaaagtcataacggttgtgtttatgtcacccggaaatcaagatgtgttattttcatttcatca cctatcgaaaacgacggagaacctttcaaattggagcgagataaacaagttaaagtgtttgactttttcggctacttcga cccaaagctacagcaatatacttatacaggaaaagaatctgtaaagcccaaaccctattttcaaatcggattcggacaaa aacttcagtccgctaagagtttggaaaatagtaatctccttatttccggtatcgtctatcactgcaaagctgcgtatcga ctctcccaggtcacttgcagtccactttcacccccaatagaaatgtctaactccgacgaatacgacaagttactgcgata cgctcatgatacgcagcgacacattgcattaggacggagccctcttgccgctgatcccgtggaaagccatccagcgactc tacagctgtttaacggatttacagactttcagcaacgcgagtcctgcgcaatggcagaatga |
|
Protein
| Protein ID | pfu_aug2.0_245.1_17168.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_245.1_17168.t1 MGNRCRLRTAICHEWAIHTGRYREGVDASDYPTWKTRFRCALNKLPDIQEVKTFSKLDGPEPFRAYRFLTREELIEIKAR MGENRMSFDLTDIPRPIEDKSSPLPDIVNNLPQGAMSTQQTFNLPNLPSDLNEINIEPFKSDSLNSIKQEPMDTEAADVQ GPGRHVQTLLNNNGQDPFPYELRIQVRYCAKEVLDRTVRNPNGCRLYYGQQVEPPIPLLQQEIYGNPDADQIHFPSCKSP NNFAQERHTQDLLCAFERGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIESHNGCVYVTRKSRCVIFISS PIENDGEPFKLERDKQVKVFDFFGYFDPKLQQYTYTGKESVKPKPYFQIGFGQKLQSAKSLENSNLLISGIVYHCKAAYR LSQVTCSPLSPPIEMSNSDEYDKLLRYAHDTQRHIALGRSPLAADPVESHPATLQLFNGFTDFQQRESCAMAE |
|